diff --git a/index.html b/index.html
index bed63b2..18b65c5 100644
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+++ b/index.html
@@ -188,8 +188,8 @@
     <ul class="md-nav__list" data-md-scrollfix>
       
         <li class="md-nav__item">
-  <a href="#what-does-it-do" class="md-nav__link">
-    What does it do
+  <a href="#what-is-cadmus" class="md-nav__link">
+    What is Cadmus?
   </a>
   
 </li>
@@ -574,8 +574,8 @@
     <ul class="md-nav__list" data-md-scrollfix>
       
         <li class="md-nav__item">
-  <a href="#what-does-it-do" class="md-nav__link">
-    What does it do
+  <a href="#what-is-cadmus" class="md-nav__link">
+    What is Cadmus?
   </a>
   
 </li>
@@ -697,7 +697,7 @@
 <h1 id="cadmus">Cadmus!<a class="headerlink" href="#cadmus" title="Permanent link">&para;</a></h1>
 <p>Cadmus is a knowledge management tool in your terminal.</p>
 <p><img alt="" src="media/Many_Examples.png" style="height:350px" /></p>
-<h2 id="what-does-it-do">What does it do<a class="headerlink" href="#what-does-it-do" title="Permanent link">&para;</a></h2>
+<h2 id="what-is-cadmus">What is Cadmus?<a class="headerlink" href="#what-is-cadmus" title="Permanent link">&para;</a></h2>
 <p>Cadmus provides command driven interface to find and edit Markdown files, such as finding by name, searching for terms, filtering by tags, generating backlinks and generating relative links to other notes.</p>
 <h2 id="how-does-it-work">How does it Work<a class="headerlink" href="#how-does-it-work" title="Permanent link">&para;</a></h2>
 <p>Cadmus is just a bunch of shell scripts that essentially use pipes and <em>ripgrep</em> with <em>skim</em> to display them.</p>
diff --git a/search/search_index.json b/search/search_index.json
index 4a92b42..9c563d5 100644
--- a/search/search_index.json
+++ b/search/search_index.json
@@ -1 +1 @@
-{"config":{"lang":["en"],"min_search_length":3,"prebuild_index":true,"separator":"[\\s\\-]+"},"docs":[{"location":"index.html","text":"Cadmus! \u00b6 Cadmus is a knowledge management tool in your terminal. What does it do \u00b6 Cadmus provides command driven interface to find and edit Markdown files, such as finding by name, searching for terms, filtering by tags, generating backlinks and generating relative links to other notes. How does it Work \u00b6 Cadmus is just a bunch of shell scripts that essentially use pipes and ripgrep with skim to display them. How Do i Use It \u00b6 Installation \u00b6 cadmus is available on the AUR , generally however cadmus will operate in a portable fashion from =~/.cadmus/=, so just using git is fine as well: cd $( mktemp -d ) wget https://raw.githubusercontent.com/RyanGreenup/cadmus/master/install.sh bash install.sh Note To remove it it is sufficient to perform: rm -rf \" $HOME /.cadmus\" rm ~/.local/bin/cadmus Warning This assumes that the dependencies have all been installed and recoll is indexing the directory of your notes. Usage \u00b6 Just run cadmus at the terminal and it will walk you through generating a config file. Afterwards running cadmus will show various commands such as find and search that can be used to work with your knowledge base. Note Shortly functionality will be implemented to allow creating a .cadmus file in any directory that will act as a config for all markdown files beneath that directory, this is useful if you want to use cadmus with documentation for a project and still have access to your notes, or have multiple knowledge bases. When or Why Would I Use This \u00b6 Well I wrote this because my interests are Math and Data Sci and quite frankly I suffer from information overload, I like open-source stuff, simple scripts and unix philosophy so if any of that resonates with you try it out. This is all modular so take what you like and reimplement it, fork it, make PR's and please fell free to post issues even if it's just to say Hey, I like tool x have you tried it before? . Background \u00b6 The idea of cadmus is to demonstrate how powerful the terminal can be and how it can act as a functional replacement for tools like OneNote or Evernote. In reality Cadmus is just a couple of shell scripts to help users tie together other really good tools like Skim , ripgrep , recoll and TMSU . keyboard bindings \u00b6 Command Shortcut Description cadmus find Ctrl - Q switch between find and grep in skim Dependencies \u00b6 bat cut fd find fzf GNU realpath grep highlight jq Arch | brew | ubuntu mdcat AUR node Pandoc perl python ranger recode Recoll rg Make sure to include pcre2 , this comes in Arch , if using cargo : cargo install ripgrep --features 'pcre2' sd sed skim tmsu AUR xclip or wl-clipboard Recommended for all Features \u00b6 iproute2 (for the ip binary) if you're on mac this stackExchange answer suggests iproute2 may work tectonic texlive Kitty I've also heard good things about iterm2 MkDocs MkDocs Material Extensions MkDocs Material Theme nvim tectonic WeasyPrint Interesting / Helpful / Recommended Generally (Not strictly necessary) \u00b6 guake or yakuake MarkText mdless readability-cli VNote VSCode PATH \u00b6 If any dependencies are installed with pip or cargo it will be necessary to add these directories to your PATH : ## bash echo ' export PATH=\"$HOME/.local/bin:$PATH\" export PATH=\"$HOME/.cargo/bin:$PATH\" ' >> ~/.bashrc ## zsh echo ' export PATH=\"$HOME/.local/bin:$PATH\" export PATH=\"$HOME/.cargo/bin:$PATH\" ' >> ~/.bashrc ## fish echo ' set PATH $HOME/.local/bin $PATH set PATH $HOME/bin $PATH set PATH \"$HOME/.cargo/bin $PATH ' >> ~/.config/fish/config.fish","title":"What does it do"},{"location":"index.html#cadmus","text":"Cadmus is a knowledge management tool in your terminal.","title":"Cadmus!"},{"location":"index.html#what-does-it-do","text":"Cadmus provides command driven interface to find and edit Markdown files, such as finding by name, searching for terms, filtering by tags, generating backlinks and generating relative links to other notes.","title":"What does it do"},{"location":"index.html#how-does-it-work","text":"Cadmus is just a bunch of shell scripts that essentially use pipes and ripgrep with skim to display them.","title":"How does it Work"},{"location":"index.html#how-do-i-use-it","text":"","title":"How Do i Use It"},{"location":"index.html#installation","text":"cadmus is available on the AUR , generally however cadmus will operate in a portable fashion from =~/.cadmus/=, so just using git is fine as well: cd $( mktemp -d ) wget https://raw.githubusercontent.com/RyanGreenup/cadmus/master/install.sh bash install.sh Note To remove it it is sufficient to perform: rm -rf \" $HOME /.cadmus\" rm ~/.local/bin/cadmus Warning This assumes that the dependencies have all been installed and recoll is indexing the directory of your notes.","title":"Installation"},{"location":"index.html#usage","text":"Just run cadmus at the terminal and it will walk you through generating a config file. Afterwards running cadmus will show various commands such as find and search that can be used to work with your knowledge base. Note Shortly functionality will be implemented to allow creating a .cadmus file in any directory that will act as a config for all markdown files beneath that directory, this is useful if you want to use cadmus with documentation for a project and still have access to your notes, or have multiple knowledge bases.","title":"Usage"},{"location":"index.html#when-or-why-would-i-use-this","text":"Well I wrote this because my interests are Math and Data Sci and quite frankly I suffer from information overload, I like open-source stuff, simple scripts and unix philosophy so if any of that resonates with you try it out. This is all modular so take what you like and reimplement it, fork it, make PR's and please fell free to post issues even if it's just to say Hey, I like tool x have you tried it before? .","title":"When or Why Would I Use This"},{"location":"index.html#background","text":"The idea of cadmus is to demonstrate how powerful the terminal can be and how it can act as a functional replacement for tools like OneNote or Evernote. In reality Cadmus is just a couple of shell scripts to help users tie together other really good tools like Skim , ripgrep , recoll and TMSU .","title":"Background"},{"location":"index.html#keyboard-bindings","text":"Command Shortcut Description cadmus find Ctrl - Q switch between find and grep in skim","title":"keyboard bindings"},{"location":"index.html#dependencies","text":"bat cut fd find fzf GNU realpath grep highlight jq Arch | brew | ubuntu mdcat AUR node Pandoc perl python ranger recode Recoll rg Make sure to include pcre2 , this comes in Arch , if using cargo : cargo install ripgrep --features 'pcre2' sd sed skim tmsu AUR xclip or wl-clipboard","title":"Dependencies"},{"location":"index.html#recommended-for-all-features","text":"iproute2 (for the ip binary) if you're on mac this stackExchange answer suggests iproute2 may work tectonic texlive Kitty I've also heard good things about iterm2 MkDocs MkDocs Material Extensions MkDocs Material Theme nvim tectonic WeasyPrint","title":"Recommended for all Features"},{"location":"index.html#interesting-helpful-recommended-generally-not-strictly-necessary","text":"guake or yakuake MarkText mdless readability-cli VNote VSCode","title":"Interesting / Helpful / Recommended Generally (Not strictly necessary)"},{"location":"index.html#path","text":"If any dependencies are installed with pip or cargo it will be necessary to add these directories to your PATH : ## bash echo ' export PATH=\"$HOME/.local/bin:$PATH\" export PATH=\"$HOME/.cargo/bin:$PATH\" ' >> ~/.bashrc ## zsh echo ' export PATH=\"$HOME/.local/bin:$PATH\" export PATH=\"$HOME/.cargo/bin:$PATH\" ' >> ~/.bashrc ## fish echo ' set PATH $HOME/.local/bin $PATH set PATH $HOME/bin $PATH set PATH \"$HOME/.cargo/bin $PATH ' >> ~/.config/fish/config.fish","title":"PATH"},{"location":"Convert.html","text":"Note Start this with cadmus convert What does it do \u00b6 This provides options for transforming the clipboard into other markup languages for quick copy paste. How Do I use it \u00b6 Warning This requires LaTeX or Tectonic, as well as a recent version of pandoc. Just run cadmus convert org2md/md2mediawiki/... and the clipboard will be transformed from one markup language into the other. When Would This Be Used \u00b6 This is great for taking stuff of Wikipedia or for using Dokuwiki or org-mode . Example \u00b6 #TODO How does it Work \u00b6 This simply uses pandoc, just search for pandoc inside bin/cadmus","title":"Convert"},{"location":"Convert.html#what-does-it-do","text":"This provides options for transforming the clipboard into other markup languages for quick copy paste.","title":"What does it do"},{"location":"Convert.html#how-do-i-use-it","text":"Warning This requires LaTeX or Tectonic, as well as a recent version of pandoc. Just run cadmus convert org2md/md2mediawiki/... and the clipboard will be transformed from one markup language into the other.","title":"How Do I use it"},{"location":"Convert.html#when-would-this-be-used","text":"This is great for taking stuff of Wikipedia or for using Dokuwiki or org-mode .","title":"When Would This Be Used"},{"location":"Convert.html#example","text":"#TODO","title":"Example"},{"location":"Convert.html#how-does-it-work","text":"This simply uses pandoc, just search for pandoc inside bin/cadmus","title":"How does it Work"},{"location":"Export.html","text":"Note Start this with cadmus export What does it do \u00b6 This provides options for exporting notes using \\LaTeX \\LaTeX and pandoc How Do I use it \u00b6 Warning This requires LaTeX or Tectonic, as well as a recent version of pandoc. Just run cadmus export pdf/html/docs and skim will pop up and offer notes to choose from. When Would This Be Used \u00b6 Grat for sharing notes with somebody who doesn't want Markdown. Example \u00b6 #TODO How does it Work \u00b6 This simply uses pandoc, just search for pandoc inside bin/cadmus","title":"Export"},{"location":"Export.html#what-does-it-do","text":"This provides options for exporting notes using \\LaTeX \\LaTeX and pandoc","title":"What does it do"},{"location":"Export.html#how-do-i-use-it","text":"Warning This requires LaTeX or Tectonic, as well as a recent version of pandoc. Just run cadmus export pdf/html/docs and skim will pop up and offer notes to choose from.","title":"How Do I use it"},{"location":"Export.html#when-would-this-be-used","text":"Grat for sharing notes with somebody who doesn't want Markdown.","title":"When Would This Be Used"},{"location":"Export.html#example","text":"#TODO","title":"Example"},{"location":"Export.html#how-does-it-work","text":"This simply uses pandoc, just search for pandoc inside bin/cadmus","title":"How does it Work"},{"location":"find.html","text":"Note Start this with cadmus find What does it do \u00b6 This starts a find dialog with a preview of the note on the side. How Do I use it \u00b6 After running the command type in the name or directory of a note and the fuzzy matches will be presented with an instant preview to the side. Press Ctrl + Q to toggle searching inside the note for a string, any matches will be highlighted. Pressing Enter on a note will open it in the default app, 1 if you want to do something else with it copy the path to the clipboard with Alt + w as described below in Keyboard Shortcuts . Keyboard Shortcuts \u00b6 Keys Description PgUp / PgDn Scroll Preview Ctrl - w Copy Absolute path to note 2 Alt - w Copy Relative path to note Ctrl - o Open the note in the default app without exiting Alt - y Copy File Contents to Clipboard 3 When Would This Be Used \u00b6 Imagine you're sitting at your desk and you forgot how to pipe with Mathematica , you're solution is cadmus find and then type something like computer algebra then Ctrl - Q -> . Example \u00b6 How does it Work \u00b6 So essentially this just uses skim and bat to filter/preview the notes, the interactive command is used with ripgrep and piping (that took me forever to figure out!!) to highlight the match in the preview. 4 This is the code that achieves it: sk --ansi -m -c 'rg -l -t markdown --ignore-case \"{}\"' \\ --preview \"bat {} 2> /dev/null \\ --color=always --line-range :500 \\ --terminal-width 80 \\ --theme=TwoDark |\\ rg --pretty --colors --context 20 {cq} \\ --no-line-number --ignore-case \\ --colors 'match:fg:21,39,200' \\ --colors 'line:style:nobold' \\ --colors 'match:style:bold' \\ --colors 'match:bg:30,200,30'\" \\ --bind 'ctrl-f:interactive,pgup:preview-page-up,pgdn:preview-page-down' \\ --bind 'ctrl-w:execute-silent(echo {} |\\ xargs realpath |\\ xclip -selection clipboard)' \\ --bind 'alt-w:execute-silent(echo {} | xclip -selection clipboard)' \\ --bind 'alt-v:execute-silent(code -a {}),alt-e:execute-silent(emacs {})' \\ --bind 'ctrl-o:execute-silent(xdg-open {})' \\ --bind 'alt-y:execute-silent(cat {} | xclip -selection clipboard)' \\ --bind 'alt-o:execute-silent(cat {} |\\ pandoc -f markdown -t html --mathml |\\ xclip -selection clipboard)' \\ --bind 'alt-f:execute-silent(echo {} |\\ xargs dirname |\\ xargs cd; cat {} |\\ pandoc -f markdown -t dokuwiki --mathml |\\ xclip -selection clipboard)' \\ --color = fg:#f8f8f2,bg:-1,matched:#6272a4,current_fg:#50fa7b,current_bg:#381070,border:#ff79c6,prompt:#bd93f9,query:#bd93f9,marker:#f1fa8c,header:#f1fa8c xdg-open / open on Linux/Mac respectively \u21a9 TODO: this only works on Xorg at the moment \u21a9 This is really good for Zulip / Discord \u21a9 This highlighting works with both bat and MDCat , I prefer MDCat but there is a bug with footnotes preventing me from being able to use it right at the moment. \u21a9","title":"Find"},{"location":"find.html#what-does-it-do","text":"This starts a find dialog with a preview of the note on the side.","title":"What does it do"},{"location":"find.html#how-do-i-use-it","text":"After running the command type in the name or directory of a note and the fuzzy matches will be presented with an instant preview to the side. Press Ctrl + Q to toggle searching inside the note for a string, any matches will be highlighted. Pressing Enter on a note will open it in the default app, 1 if you want to do something else with it copy the path to the clipboard with Alt + w as described below in Keyboard Shortcuts .","title":"How Do I use it"},{"location":"find.html#keyboard-shortcuts","text":"Keys Description PgUp / PgDn Scroll Preview Ctrl - w Copy Absolute path to note 2 Alt - w Copy Relative path to note Ctrl - o Open the note in the default app without exiting Alt - y Copy File Contents to Clipboard 3","title":"Keyboard Shortcuts"},{"location":"find.html#when-would-this-be-used","text":"Imagine you're sitting at your desk and you forgot how to pipe with Mathematica , you're solution is cadmus find and then type something like computer algebra then Ctrl - Q -> .","title":"When Would This Be Used"},{"location":"find.html#example","text":"","title":"Example"},{"location":"find.html#how-does-it-work","text":"So essentially this just uses skim and bat to filter/preview the notes, the interactive command is used with ripgrep and piping (that took me forever to figure out!!) to highlight the match in the preview. 4 This is the code that achieves it: sk --ansi -m -c 'rg -l -t markdown --ignore-case \"{}\"' \\ --preview \"bat {} 2> /dev/null \\ --color=always --line-range :500 \\ --terminal-width 80 \\ --theme=TwoDark |\\ rg --pretty --colors --context 20 {cq} \\ --no-line-number --ignore-case \\ --colors 'match:fg:21,39,200' \\ --colors 'line:style:nobold' \\ --colors 'match:style:bold' \\ --colors 'match:bg:30,200,30'\" \\ --bind 'ctrl-f:interactive,pgup:preview-page-up,pgdn:preview-page-down' \\ --bind 'ctrl-w:execute-silent(echo {} |\\ xargs realpath |\\ xclip -selection clipboard)' \\ --bind 'alt-w:execute-silent(echo {} | xclip -selection clipboard)' \\ --bind 'alt-v:execute-silent(code -a {}),alt-e:execute-silent(emacs {})' \\ --bind 'ctrl-o:execute-silent(xdg-open {})' \\ --bind 'alt-y:execute-silent(cat {} | xclip -selection clipboard)' \\ --bind 'alt-o:execute-silent(cat {} |\\ pandoc -f markdown -t html --mathml |\\ xclip -selection clipboard)' \\ --bind 'alt-f:execute-silent(echo {} |\\ xargs dirname |\\ xargs cd; cat {} |\\ pandoc -f markdown -t dokuwiki --mathml |\\ xclip -selection clipboard)' \\ --color = fg:#f8f8f2,bg:-1,matched:#6272a4,current_fg:#50fa7b,current_bg:#381070,border:#ff79c6,prompt:#bd93f9,query:#bd93f9,marker:#f1fa8c,header:#f1fa8c xdg-open / open on Linux/Mac respectively \u21a9 TODO: this only works on Xorg at the moment \u21a9 This is really good for Zulip / Discord \u21a9 This highlighting works with both bat and MDCat , I prefer MDCat but there is a bug with footnotes preventing me from being able to use it right at the moment. \u21a9","title":"How does it Work"},{"location":"preview.html","text":"Note Start this with cadmus preview What does it do \u00b6 This starts markserv in the notes directory and prints a qr code to the terminal. How Do I use it \u00b6 Warning This requires markserv and qrencode. Just run cadmus preview or cadmus preview! for global, to view your notes with makserv. When Would This Be Used \u00b6 This is good for previewing your notes similar to what they might look like on GitHub , the global preview! can be good to read notes on an iPad or share with friends over the LAN (think on campus). Example \u00b6 #TODO How does it Work \u00b6 This just uses ordinary calls to MarkServ","title":"Preview"},{"location":"preview.html#what-does-it-do","text":"This starts markserv in the notes directory and prints a qr code to the terminal.","title":"What does it do"},{"location":"preview.html#how-do-i-use-it","text":"Warning This requires markserv and qrencode. Just run cadmus preview or cadmus preview! for global, to view your notes with makserv.","title":"How Do I use it"},{"location":"preview.html#when-would-this-be-used","text":"This is good for previewing your notes similar to what they might look like on GitHub , the global preview! can be good to read notes on an iPad or share with friends over the LAN (think on campus).","title":"When Would This Be Used"},{"location":"preview.html#example","text":"#TODO","title":"Example"},{"location":"preview.html#how-does-it-work","text":"This just uses ordinary calls to MarkServ","title":"How does it Work"},{"location":"search.html","text":"Note Start this with cadmus search What does it do \u00b6 This starts a search dialog with a preview of the note on the side. How Do I use it \u00b6 Warning This requires recoll set up to index your notes directory. After running the command type in a query just like you would with Google , matches will be presented with an instant preview to the side. Press Ctrl + Q to toggle search inside the note for a string (there will not be highlighting) 1 Pressing Enter on a note will open it in the default app, 2 if you want to do something else with it copy the path to the clipboard with Alt + w as described below in Keyboard Shortcuts . Keyboard Shortcuts \u00b6 Keys Description PgUp / PgDn Scroll Preview Ctrl - w Copy Absolute path to note 3 Alt - w Copy Relative path to note Ctrl - o Open the note in the default app without exiting Alt - y Copy File Contents to Clipboard 4 When Would This Be Used \u00b6 Imagine you're sitting at your desk and this time you need to, solve a linear recurrence relation, you're solution is cadmus search and then type something like linear recursion then Ctrl - Q math mod . Example \u00b6 How does it Work \u00b6 So essentially this just uses skim and bat to filter/preview the notes, the interactive command is used with ripgrep and piping (that took me forever to figure out!!) to highlight the match in the preview. 5 This is the code that achieves it: sk -m -i -c 'recoll -b -t -q \"ext:md\" {} |\\ cut -c 8- | sed s/^/realpath\\ \\\"/ |\\ sed s+\\$+\\\"\\ --relative-to\\ \\\"./\\\"+ | bash' \\ --bind pgup:preview-page-up,pgdn:preview-page-down \\ --preview \"bat --color=always --line-range :500 \\ --terminal-width 80 --theme=TwoDark {+} \\ --italic-text=always \\ --decorations=always\" \\ --color = fg:#f8f8f2,bg:-1,matched:#6272a4,current_fg:#50fa7b,current_bg:#381070,border:#ff79c6,prompt:#bd93f9,query:#bd93f9,marker:#f1fa8c,header:#f1fa8c The distinction between this and find is essentially the distinction between grep and a search engine. \u21a9 xdg-open / open on Linux/Mac respectively \u21a9 TODO: this only works on Xorg at the moment \u21a9 This is really good for Zulip / Discord \u21a9 This highlighting works with both bat and MDCat , I prefer MDCat but there is a bug with footnotes preventing me from being able to use it right at the moment. \u21a9","title":"Search"},{"location":"search.html#what-does-it-do","text":"This starts a search dialog with a preview of the note on the side.","title":"What does it do"},{"location":"search.html#how-do-i-use-it","text":"Warning This requires recoll set up to index your notes directory. After running the command type in a query just like you would with Google , matches will be presented with an instant preview to the side. Press Ctrl + Q to toggle search inside the note for a string (there will not be highlighting) 1 Pressing Enter on a note will open it in the default app, 2 if you want to do something else with it copy the path to the clipboard with Alt + w as described below in Keyboard Shortcuts .","title":"How Do I use it"},{"location":"search.html#keyboard-shortcuts","text":"Keys Description PgUp / PgDn Scroll Preview Ctrl - w Copy Absolute path to note 3 Alt - w Copy Relative path to note Ctrl - o Open the note in the default app without exiting Alt - y Copy File Contents to Clipboard 4","title":"Keyboard Shortcuts"},{"location":"search.html#when-would-this-be-used","text":"Imagine you're sitting at your desk and this time you need to, solve a linear recurrence relation, you're solution is cadmus search and then type something like linear recursion then Ctrl - Q math mod .","title":"When Would This Be Used"},{"location":"search.html#example","text":"","title":"Example"},{"location":"search.html#how-does-it-work","text":"So essentially this just uses skim and bat to filter/preview the notes, the interactive command is used with ripgrep and piping (that took me forever to figure out!!) to highlight the match in the preview. 5 This is the code that achieves it: sk -m -i -c 'recoll -b -t -q \"ext:md\" {} |\\ cut -c 8- | sed s/^/realpath\\ \\\"/ |\\ sed s+\\$+\\\"\\ --relative-to\\ \\\"./\\\"+ | bash' \\ --bind pgup:preview-page-up,pgdn:preview-page-down \\ --preview \"bat --color=always --line-range :500 \\ --terminal-width 80 --theme=TwoDark {+} \\ --italic-text=always \\ --decorations=always\" \\ --color = fg:#f8f8f2,bg:-1,matched:#6272a4,current_fg:#50fa7b,current_bg:#381070,border:#ff79c6,prompt:#bd93f9,query:#bd93f9,marker:#f1fa8c,header:#f1fa8c The distinction between this and find is essentially the distinction between grep and a search engine. \u21a9 xdg-open / open on Linux/Mac respectively \u21a9 TODO: this only works on Xorg at the moment \u21a9 This is really good for Zulip / Discord \u21a9 This highlighting works with both bat and MDCat , I prefer MDCat but there is a bug with footnotes preventing me from being able to use it right at the moment. \u21a9","title":"How does it Work"},{"location":"Misc/Summary-Misc.html","text":"Note Start this with cadmus misc What does it do \u00b6 These are just miscellaneous tools that either open editors, relocate windows or sync with git. How Do I use it \u00b6 Run cadmus misc ... for whatever command. When Would This Be Used \u00b6 Much of this stuff is arbitrary things I found myself wanting to alias.","title":"Summary"},{"location":"Misc/Summary-Misc.html#what-does-it-do","text":"These are just miscellaneous tools that either open editors, relocate windows or sync with git.","title":"What does it do"},{"location":"Misc/Summary-Misc.html#how-do-i-use-it","text":"Run cadmus misc ... for whatever command.","title":"How Do I use it"},{"location":"Misc/Summary-Misc.html#when-would-this-be-used","text":"Much of this stuff is arbitrary things I found myself wanting to alias.","title":"When Would This Be Used"},{"location":"Misc/windows.html","text":"Note Start this with cadmus misc wa/wr What does it do \u00b6 This offers a fuzzy selection of windows just like rofi but in the terminal. How Do I use it \u00b6 Warning This requires wmctrl set up to index your notes directory. Run cadmus misc wa to activate a window or cadmus misc wr to relocate a window, a dialog will popup. Type to filter the popup and press Enter to activate that window. When Would This Be Used \u00b6 This is good for when you're looking for a window but you don't want to use rofi for one reason or another. Example \u00b6 TODO \u00b6 How does it Work \u00b6 This just uses wmctrl and fzf to filter through the windows like this: bash wmctrl -R \"$(wmctrl -l | cut -f 5- -d \" \" | fzf)\"","title":"Windows"},{"location":"Misc/windows.html#what-does-it-do","text":"This offers a fuzzy selection of windows just like rofi but in the terminal.","title":"What does it do"},{"location":"Misc/windows.html#how-do-i-use-it","text":"Warning This requires wmctrl set up to index your notes directory. Run cadmus misc wa to activate a window or cadmus misc wr to relocate a window, a dialog will popup. Type to filter the popup and press Enter to activate that window.","title":"How Do I use it"},{"location":"Misc/windows.html#when-would-this-be-used","text":"This is good for when you're looking for a window but you don't want to use rofi for one reason or another.","title":"When Would This Be Used"},{"location":"Misc/windows.html#example","text":"","title":"Example"},{"location":"Misc/windows.html#todo","text":"","title":"TODO"},{"location":"Misc/windows.html#how-does-it-work","text":"This just uses wmctrl and fzf to filter through the windows like this: bash wmctrl -R \"$(wmctrl -l | cut -f 5- -d \" \" | fzf)\"","title":"How does it Work"},{"location":"Tools/New.html","text":"New Note \u00b6","title":"New Note"},{"location":"Tools/New.html#new-note","text":"","title":"New Note"},{"location":"tags/Filter.html","text":"Note Start this with cadmus tags filter What does it do \u00b6 This concurrently filters your notes based on the tags that are in TMSU , it will be necessary to create tags in TMSU before doing this if the tags have changed. How Do I use it \u00b6 After running the command a list of tags that are currently in the tmsu database will be presented, press Enter to select an inital tag. From here the following will be displayed: Chosen Tags Matching Notes Concurrent Tags Further tags can be chosen to narrow down the search by pressing t or the currently selected tags can be accepted with Any key. After accepting the chosen tags with any key, all the files can be symlinked into /tmp , opened in VScode 1 or the find selecor can be started on the matches. When Would This Be Used \u00b6 This is great for when you're trying to collect all the knowledge you have on a particular topic when it isn't captured by your directory structure. (e.g. all notes on #programming may span many different directories) Example \u00b6 How does it Work \u00b6 I don't remember haha. Basically there is a bash function that finds tags in /TMSU/ and it's recursively called with t until any key is pressed. The chosen tags are subtracted from the concurrent tags by using comm : ConcurrentTags = \" $( comm -13 < ( echo \" $ChosenTags \" | sort ) <(echo \" $ConcurrentTags \" | sort))\" The relevant script is in bin/tags/FilterNotesByTMSUTag.sh This will probably change to the default app when I get time to look at it, just change it to whatever app you like in /bin/tags/FilterNotesByTMSUTag.sh \u21a9","title":"Filter"},{"location":"tags/Filter.html#what-does-it-do","text":"This concurrently filters your notes based on the tags that are in TMSU , it will be necessary to create tags in TMSU before doing this if the tags have changed.","title":"What does it do"},{"location":"tags/Filter.html#how-do-i-use-it","text":"After running the command a list of tags that are currently in the tmsu database will be presented, press Enter to select an inital tag. From here the following will be displayed: Chosen Tags Matching Notes Concurrent Tags Further tags can be chosen to narrow down the search by pressing t or the currently selected tags can be accepted with Any key. After accepting the chosen tags with any key, all the files can be symlinked into /tmp , opened in VScode 1 or the find selecor can be started on the matches.","title":"How Do I use it"},{"location":"tags/Filter.html#when-would-this-be-used","text":"This is great for when you're trying to collect all the knowledge you have on a particular topic when it isn't captured by your directory structure. (e.g. all notes on #programming may span many different directories)","title":"When Would This Be Used"},{"location":"tags/Filter.html#example","text":"","title":"Example"},{"location":"tags/Filter.html#how-does-it-work","text":"I don't remember haha. Basically there is a bash function that finds tags in /TMSU/ and it's recursively called with t until any key is pressed. The chosen tags are subtracted from the concurrent tags by using comm : ConcurrentTags = \" $( comm -13 < ( echo \" $ChosenTags \" | sort ) <(echo \" $ConcurrentTags \" | sort))\" The relevant script is in bin/tags/FilterNotesByTMSUTag.sh This will probably change to the default app when I get time to look at it, just change it to whatever app you like in /bin/tags/FilterNotesByTMSUTag.sh \u21a9","title":"How does it Work"},{"location":"tags/create.html","text":"Note Start this with cadmus tags create Warning The tags stuff is a work in progress* , it's a bit rough around the edges. What does it do \u00b6 This starts an interactive dialog to extract inline #tags as well as tags in a YAML header and pass them to TMSU . How Do I use it \u00b6 After running the command type a menu will be displayed, if there is no pre-existing TMSU database, press n to create one and then re-execute cadmus tags create . From there usually you will want to extract both types of tags so press b , cadmus will sync the tags between your notes and TMSU 1 When Would This Be Used \u00b6 This needs to be used every time your tags are changed in order to bring tmsu back in sync, otherwise when you look for tags it won't show the correct notes. Example \u00b6 How does it Work \u00b6 Hash tags \u00b6 Hash tags are easy, just use ripgrep with pcre2 : rg --pcre2 '(?<=\\s#)[a-zA-Z]+(?=\\s)' -t markdown -o $NOTE_DIR \\ | sed s+:+ \\ + | sed s/^/tmsu \\ tag \\ / YAML Tags \u00b6 This is a little more involved, it's essentially a couple of `for`` loops over the files, I did it in R first but it was too slow so I redid it in NodeJS , checkout these files for the source code: /bin/tags/yaml-parse.js /home/ryan/.cadmus/bin/tags/ListTags.R Integrating with Vim \u00b6 I put these lines in my .vimrc to generate a list and filter tags using FZF.vim: imap < expr > < C - c >< C - y > fzf# vim # complete ( 'node ~/bin/printMarkdownTags/yaml-parse.js $HOME/Notes/MD/notes \\| sort -u' ) imap < expr > < C - c >< C - t > fzf# vim # complete ( 'rg --pcre2 \"\\s#[a-zA-Z-@]+\\s\" -o --no-filename $HOME/Notes/MD -t md \\| sort -u' ) Dependencies \u00b6 This requires, TMSU, nodejs and ripgrep with pcre2. I played with the idea of avoiding TMSU but it works really well and the Virtual File System is really neat. \u21a9","title":"Create"},{"location":"tags/create.html#what-does-it-do","text":"This starts an interactive dialog to extract inline #tags as well as tags in a YAML header and pass them to TMSU .","title":"What does it do"},{"location":"tags/create.html#how-do-i-use-it","text":"After running the command type a menu will be displayed, if there is no pre-existing TMSU database, press n to create one and then re-execute cadmus tags create . From there usually you will want to extract both types of tags so press b , cadmus will sync the tags between your notes and TMSU 1","title":"How Do I use it"},{"location":"tags/create.html#when-would-this-be-used","text":"This needs to be used every time your tags are changed in order to bring tmsu back in sync, otherwise when you look for tags it won't show the correct notes.","title":"When Would This Be Used"},{"location":"tags/create.html#example","text":"","title":"Example"},{"location":"tags/create.html#how-does-it-work","text":"","title":"How does it Work"},{"location":"tags/create.html#hash-tags","text":"Hash tags are easy, just use ripgrep with pcre2 : rg --pcre2 '(?<=\\s#)[a-zA-Z]+(?=\\s)' -t markdown -o $NOTE_DIR \\ | sed s+:+ \\ + | sed s/^/tmsu \\ tag \\ /","title":"Hash tags"},{"location":"tags/create.html#yaml-tags","text":"This is a little more involved, it's essentially a couple of `for`` loops over the files, I did it in R first but it was too slow so I redid it in NodeJS , checkout these files for the source code: /bin/tags/yaml-parse.js /home/ryan/.cadmus/bin/tags/ListTags.R","title":"YAML Tags"},{"location":"tags/create.html#integrating-with-vim","text":"I put these lines in my .vimrc to generate a list and filter tags using FZF.vim: imap < expr > < C - c >< C - y > fzf# vim # complete ( 'node ~/bin/printMarkdownTags/yaml-parse.js $HOME/Notes/MD/notes \\| sort -u' ) imap < expr > < C - c >< C - t > fzf# vim # complete ( 'rg --pcre2 \"\\s#[a-zA-Z-@]+\\s\" -o --no-filename $HOME/Notes/MD -t md \\| sort -u' )","title":"Integrating with Vim"},{"location":"tags/create.html#dependencies","text":"This requires, TMSU, nodejs and ripgrep with pcre2. I played with the idea of avoiding TMSU but it works really well and the Virtual File System is really neat. \u21a9","title":"Dependencies"},{"location":"tools/BackLinks.html","text":"Note Start this with cadmus tools backlinks What does it do \u00b6 This takes a notes path from the clipboard and displays in the terminal any files that link to it using either: [markdown](./links.md) [[wiki-links]] How Do I use it \u00b6 Copy a note path to the clipboard then run cadmus tools backlinks , any notes that link to it will be displayed in the terminal. When Would This Be Used \u00b6 This is handy when you have some piece of code, somewhere, that you can't find but you're sure you linked to. Example \u00b6 How does it Work \u00b6 This is just more ripgrep : rg -e \"\\[.*\\]\\(.* $term \\.md\\)\" -e \"\\[\\[ $term \\]\\]\" -e \"\\[\\[ $term .*\\]\\]\" \\ ~/Notes/MD/notes \\ -t markdown -ol Note See the script in /bin/tools/List-Backlinks.sh","title":"Display Back Links"},{"location":"tools/BackLinks.html#what-does-it-do","text":"This takes a notes path from the clipboard and displays in the terminal any files that link to it using either: [markdown](./links.md) [[wiki-links]]","title":"What does it do"},{"location":"tools/BackLinks.html#how-do-i-use-it","text":"Copy a note path to the clipboard then run cadmus tools backlinks , any notes that link to it will be displayed in the terminal.","title":"How Do I use it"},{"location":"tools/BackLinks.html#when-would-this-be-used","text":"This is handy when you have some piece of code, somewhere, that you can't find but you're sure you linked to.","title":"When Would This Be Used"},{"location":"tools/BackLinks.html#example","text":"","title":"Example"},{"location":"tools/BackLinks.html#how-does-it-work","text":"This is just more ripgrep : rg -e \"\\[.*\\]\\(.* $term \\.md\\)\" -e \"\\[\\[ $term \\]\\]\" -e \"\\[\\[ $term .*\\]\\]\" \\ ~/Notes/MD/notes \\ -t markdown -ol Note See the script in /bin/tools/List-Backlinks.sh","title":"How does it Work"},{"location":"tools/New.html","text":"Note Start this with cadmus tools new What does it do \u00b6 This provides a dialog that sets the title, heading and filename of a note, offers tags to apply and offers fuzzy search for the appropriate directory to save the note in. How Do I use it \u00b6 After running the command multiple tags will be displayed, filter the tags by typing and use Tab to selet multiple tags and Enter to continue. Next a directory list will be presented, search through the directories by typing in the name of a directory. Finally a dialog to type in a name for the title, heading and filename (which will be made to be identical) will be offered, type in title: Spaces are fine No extension The file name will be slugified with - and the extension .md will be applied. When Would This Be Used \u00b6 This is great when you want to quickly make a new note in the right place with the right tags. Example \u00b6 How does it Work \u00b6 This just uses TMSU and Skim to choose the directories and tags.","title":"New Note"},{"location":"tools/New.html#what-does-it-do","text":"This provides a dialog that sets the title, heading and filename of a note, offers tags to apply and offers fuzzy search for the appropriate directory to save the note in.","title":"What does it do"},{"location":"tools/New.html#how-do-i-use-it","text":"After running the command multiple tags will be displayed, filter the tags by typing and use Tab to selet multiple tags and Enter to continue. Next a directory list will be presented, search through the directories by typing in the name of a directory. Finally a dialog to type in a name for the title, heading and filename (which will be made to be identical) will be offered, type in title: Spaces are fine No extension The file name will be slugified with - and the extension .md will be applied.","title":"How Do I use it"},{"location":"tools/New.html#when-would-this-be-used","text":"This is great when you want to quickly make a new note in the right place with the right tags.","title":"When Would This Be Used"},{"location":"tools/New.html#example","text":"","title":"Example"},{"location":"tools/New.html#how-does-it-work","text":"This just uses TMSU and Skim to choose the directories and tags.","title":"How does it Work"},{"location":"tools/Summary.html","text":"Summary \u00b6 Note I intend to write up more documentation as time permits, University keeps me busy though. Command Description fix This interactively repairs a relative link, that is broken, from the clipboard link This provides an dialog to generate links between files. page-import This replaces a URL in the clipboard with markdown converted from the website random This opens a random page in the default .md app rename This renames a note and uses sed to fix any links","title":"Summary"},{"location":"tools/Summary.html#summary","text":"Note I intend to write up more documentation as time permits, University keeps me busy though. Command Description fix This interactively repairs a relative link, that is broken, from the clipboard link This provides an dialog to generate links between files. page-import This replaces a URL in the clipboard with markdown converted from the website random This opens a random page in the default .md app rename This renames a note and uses sed to fix any links","title":"Summary"},{"location":"tools/webtitle.html","text":"Note Start this with cadmus tools webtitle What does it do \u00b6 This transforms a URL in the clipboard into a formatted link How Do I use it \u00b6 Copy / Paste a URL then type cadmus tools webtitle , the clipboard should be transformed into a formatted link with the right title. When Would This Be Used \u00b6 This is great for footnotes. Example \u00b6 How does it Work \u00b6 So essentially this just uses skim and bat to filter/preview the notes, the interactive command is used with ripgrep and piping (that took me forever to figure out!!) to highlight the match in the preview. 1 This is the code that achieves it: sk -m -i -c 'recoll -b -t -q \"ext:md\" {} |\\ cut -c 8- | sed s/^/realpath\\ \\\"/ |\\ sed s+\\$+\\\"\\ --relative-to\\ \\\"./\\\"+ | bash' \\ --bind pgup:preview-page-up,pgdn:preview-page-down \\ --preview \"bat --color=always --line-range :500 \\ --terminal-width 80 --theme=TwoDark {+} \\ --italic-text=always \\ --decorations=always\" \\ --color = fg:#f8f8f2,bg:-1,matched:#6272a4,current_fg:#50fa7b,current_bg:#381070,border:#ff79c6,prompt:#bd93f9,query:#bd93f9,marker:#f1fa8c,header:#f1fa8c This highlighting works with both bat and MDCat , I prefer MDCat but there is a bug with footnotes preventing me from being able to use it right at the moment. \u21a9","title":"Print Web Title"},{"location":"tools/webtitle.html#what-does-it-do","text":"This transforms a URL in the clipboard into a formatted link","title":"What does it do"},{"location":"tools/webtitle.html#how-do-i-use-it","text":"Copy / Paste a URL then type cadmus tools webtitle , the clipboard should be transformed into a formatted link with the right title.","title":"How Do I use it"},{"location":"tools/webtitle.html#when-would-this-be-used","text":"This is great for footnotes.","title":"When Would This Be Used"},{"location":"tools/webtitle.html#example","text":"","title":"Example"},{"location":"tools/webtitle.html#how-does-it-work","text":"So essentially this just uses skim and bat to filter/preview the notes, the interactive command is used with ripgrep and piping (that took me forever to figure out!!) to highlight the match in the preview. 1 This is the code that achieves it: sk -m -i -c 'recoll -b -t -q \"ext:md\" {} |\\ cut -c 8- | sed s/^/realpath\\ \\\"/ |\\ sed s+\\$+\\\"\\ --relative-to\\ \\\"./\\\"+ | bash' \\ --bind pgup:preview-page-up,pgdn:preview-page-down \\ --preview \"bat --color=always --line-range :500 \\ --terminal-width 80 --theme=TwoDark {+} \\ --italic-text=always \\ --decorations=always\" \\ --color = fg:#f8f8f2,bg:-1,matched:#6272a4,current_fg:#50fa7b,current_bg:#381070,border:#ff79c6,prompt:#bd93f9,query:#bd93f9,marker:#f1fa8c,header:#f1fa8c This highlighting works with both bat and MDCat , I prefer MDCat but there is a bug with footnotes preventing me from being able to use it right at the moment. \u21a9","title":"How does it 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Just run cadmus export pdf/html/docs and skim will pop up and offer notes to choose from.","title":"How Do I use it"},{"location":"Export.html#when-would-this-be-used","text":"Grat for sharing notes with somebody who doesn't want Markdown.","title":"When Would This Be Used"},{"location":"Export.html#example","text":"#TODO","title":"Example"},{"location":"Export.html#how-does-it-work","text":"This simply uses pandoc, just search for pandoc inside bin/cadmus","title":"How does it Work"},{"location":"find.html","text":"Note Start this with cadmus find What does it do \u00b6 This starts a find dialog with a preview of the note on the side. How Do I use it \u00b6 After running the command type in the name or directory of a note and the fuzzy matches will be presented with an instant preview to the side. Press Ctrl + Q to toggle searching inside the note for a string, any matches will be highlighted. Pressing Enter on a note will open it in the default app, 1 if you want to do something else with it copy the path to the clipboard with Alt + w as described below in Keyboard Shortcuts . Keyboard Shortcuts \u00b6 Keys Description PgUp / PgDn Scroll Preview Ctrl - w Copy Absolute path to note 2 Alt - w Copy Relative path to note Ctrl - o Open the note in the default app without exiting Alt - y Copy File Contents to Clipboard 3 When Would This Be Used \u00b6 Imagine you're sitting at your desk and you forgot how to pipe with Mathematica , you're solution is cadmus find and then type something like computer algebra then Ctrl - Q -> . Example \u00b6 How does it Work \u00b6 So essentially this just uses skim and bat to filter/preview the notes, the interactive command is used with ripgrep and piping (that took me forever to figure out!!) to highlight the match in the preview. 4 This is the code that achieves it: sk --ansi -m -c 'rg -l -t markdown --ignore-case \"{}\"' \\ --preview \"bat {} 2> /dev/null \\ --color=always --line-range :500 \\ --terminal-width 80 \\ --theme=TwoDark |\\ rg --pretty --colors --context 20 {cq} \\ --no-line-number --ignore-case \\ --colors 'match:fg:21,39,200' \\ --colors 'line:style:nobold' \\ --colors 'match:style:bold' \\ --colors 'match:bg:30,200,30'\" \\ --bind 'ctrl-f:interactive,pgup:preview-page-up,pgdn:preview-page-down' \\ --bind 'ctrl-w:execute-silent(echo {} |\\ xargs realpath |\\ xclip -selection clipboard)' \\ --bind 'alt-w:execute-silent(echo {} | xclip -selection clipboard)' \\ --bind 'alt-v:execute-silent(code -a {}),alt-e:execute-silent(emacs {})' \\ --bind 'ctrl-o:execute-silent(xdg-open {})' \\ --bind 'alt-y:execute-silent(cat {} | xclip -selection clipboard)' \\ --bind 'alt-o:execute-silent(cat {} |\\ pandoc -f markdown -t html --mathml |\\ xclip -selection clipboard)' \\ --bind 'alt-f:execute-silent(echo {} |\\ xargs dirname |\\ xargs cd; cat {} |\\ pandoc -f markdown -t dokuwiki --mathml |\\ xclip -selection clipboard)' \\ --color = fg:#f8f8f2,bg:-1,matched:#6272a4,current_fg:#50fa7b,current_bg:#381070,border:#ff79c6,prompt:#bd93f9,query:#bd93f9,marker:#f1fa8c,header:#f1fa8c xdg-open / open on Linux/Mac respectively \u21a9 TODO: this only works on Xorg at the moment \u21a9 This is really good for Zulip / Discord \u21a9 This highlighting works with both bat and MDCat , I prefer MDCat but there is a bug with footnotes preventing me from being able to use it right at the moment. \u21a9","title":"Find"},{"location":"find.html#what-does-it-do","text":"This starts a find dialog with a preview of the note on the side.","title":"What does it do"},{"location":"find.html#how-do-i-use-it","text":"After running the command type in the name or directory of a note and the fuzzy matches will be presented with an instant preview to the side. Press Ctrl + Q to toggle searching inside the note for a string, any matches will be highlighted. Pressing Enter on a note will open it in the default app, 1 if you want to do something else with it copy the path to the clipboard with Alt + w as described below in Keyboard Shortcuts .","title":"How Do I use it"},{"location":"find.html#keyboard-shortcuts","text":"Keys Description PgUp / PgDn Scroll Preview Ctrl - w Copy Absolute path to note 2 Alt - w Copy Relative path to note Ctrl - o Open the note in the default app without exiting Alt - y Copy File Contents to Clipboard 3","title":"Keyboard Shortcuts"},{"location":"find.html#when-would-this-be-used","text":"Imagine you're sitting at your desk and you forgot how to pipe with Mathematica , you're solution is cadmus find and then type something like computer algebra then Ctrl - Q -> .","title":"When Would This Be Used"},{"location":"find.html#example","text":"","title":"Example"},{"location":"find.html#how-does-it-work","text":"So essentially this just uses skim and bat to filter/preview the notes, the interactive command is used with ripgrep and piping (that took me forever to figure out!!) to highlight the match in the preview. 4 This is the code that achieves it: sk --ansi -m -c 'rg -l -t markdown --ignore-case \"{}\"' \\ --preview \"bat {} 2> /dev/null \\ --color=always --line-range :500 \\ --terminal-width 80 \\ --theme=TwoDark |\\ rg --pretty --colors --context 20 {cq} \\ --no-line-number --ignore-case \\ --colors 'match:fg:21,39,200' \\ --colors 'line:style:nobold' \\ --colors 'match:style:bold' \\ --colors 'match:bg:30,200,30'\" \\ --bind 'ctrl-f:interactive,pgup:preview-page-up,pgdn:preview-page-down' \\ --bind 'ctrl-w:execute-silent(echo {} |\\ xargs realpath |\\ xclip -selection clipboard)' \\ --bind 'alt-w:execute-silent(echo {} | xclip -selection clipboard)' \\ --bind 'alt-v:execute-silent(code -a {}),alt-e:execute-silent(emacs {})' \\ --bind 'ctrl-o:execute-silent(xdg-open {})' \\ --bind 'alt-y:execute-silent(cat {} | xclip -selection clipboard)' \\ --bind 'alt-o:execute-silent(cat {} |\\ pandoc -f markdown -t html --mathml |\\ xclip -selection clipboard)' \\ --bind 'alt-f:execute-silent(echo {} |\\ xargs dirname |\\ xargs cd; cat {} |\\ pandoc -f markdown -t dokuwiki --mathml |\\ xclip -selection clipboard)' \\ --color = fg:#f8f8f2,bg:-1,matched:#6272a4,current_fg:#50fa7b,current_bg:#381070,border:#ff79c6,prompt:#bd93f9,query:#bd93f9,marker:#f1fa8c,header:#f1fa8c xdg-open / open on Linux/Mac respectively \u21a9 TODO: this only works on Xorg at the moment \u21a9 This is really good for Zulip / Discord \u21a9 This highlighting works with both bat and MDCat , I prefer MDCat but there is a bug with footnotes preventing me from being able to use it right at the moment. \u21a9","title":"How does it Work"},{"location":"preview.html","text":"Note Start this with cadmus preview What does it do \u00b6 This starts markserv in the notes directory and prints a qr code to the terminal. How Do I use it \u00b6 Warning This requires markserv and qrencode. Just run cadmus preview or cadmus preview! for global, to view your notes with makserv. When Would This Be Used \u00b6 This is good for previewing your notes similar to what they might look like on GitHub , the global preview! can be good to read notes on an iPad or share with friends over the LAN (think on campus). Example \u00b6 #TODO How does it Work \u00b6 This just uses ordinary calls to MarkServ","title":"Preview"},{"location":"preview.html#what-does-it-do","text":"This starts markserv in the notes directory and prints a qr code to the terminal.","title":"What does it do"},{"location":"preview.html#how-do-i-use-it","text":"Warning This requires markserv and qrencode. Just run cadmus preview or cadmus preview! for global, to view your notes with makserv.","title":"How Do I use it"},{"location":"preview.html#when-would-this-be-used","text":"This is good for previewing your notes similar to what they might look like on GitHub , the global preview! can be good to read notes on an iPad or share with friends over the LAN (think on campus).","title":"When Would This Be Used"},{"location":"preview.html#example","text":"#TODO","title":"Example"},{"location":"preview.html#how-does-it-work","text":"This just uses ordinary calls to MarkServ","title":"How does it Work"},{"location":"search.html","text":"Note Start this with cadmus search What does it do \u00b6 This starts a search dialog with a preview of the note on the side. How Do I use it \u00b6 Warning This requires recoll set up to index your notes directory. After running the command type in a query just like you would with Google , matches will be presented with an instant preview to the side. Press Ctrl + Q to toggle search inside the note for a string (there will not be highlighting) 1 Pressing Enter on a note will open it in the default app, 2 if you want to do something else with it copy the path to the clipboard with Alt + w as described below in Keyboard Shortcuts . Keyboard Shortcuts \u00b6 Keys Description PgUp / PgDn Scroll Preview Ctrl - w Copy Absolute path to note 3 Alt - w Copy Relative path to note Ctrl - o Open the note in the default app without exiting Alt - y Copy File Contents to Clipboard 4 When Would This Be Used \u00b6 Imagine you're sitting at your desk and this time you need to, solve a linear recurrence relation, you're solution is cadmus search and then type something like linear recursion then Ctrl - Q math mod . Example \u00b6 How does it Work \u00b6 So essentially this just uses skim and bat to filter/preview the notes, the interactive command is used with ripgrep and piping (that took me forever to figure out!!) to highlight the match in the preview. 5 This is the code that achieves it: sk -m -i -c 'recoll -b -t -q \"ext:md\" {} |\\ cut -c 8- | sed s/^/realpath\\ \\\"/ |\\ sed s+\\$+\\\"\\ --relative-to\\ \\\"./\\\"+ | bash' \\ --bind pgup:preview-page-up,pgdn:preview-page-down \\ --preview \"bat --color=always --line-range :500 \\ --terminal-width 80 --theme=TwoDark {+} \\ --italic-text=always \\ --decorations=always\" \\ --color = fg:#f8f8f2,bg:-1,matched:#6272a4,current_fg:#50fa7b,current_bg:#381070,border:#ff79c6,prompt:#bd93f9,query:#bd93f9,marker:#f1fa8c,header:#f1fa8c The distinction between this and find is essentially the distinction between grep and a search engine. \u21a9 xdg-open / open on Linux/Mac respectively \u21a9 TODO: this only works on Xorg at the moment \u21a9 This is really good for Zulip / Discord \u21a9 This highlighting works with both bat and MDCat , I prefer MDCat but there is a bug with footnotes preventing me from being able to use it right at the moment. \u21a9","title":"Search"},{"location":"search.html#what-does-it-do","text":"This starts a search dialog with a preview of the note on the side.","title":"What does it do"},{"location":"search.html#how-do-i-use-it","text":"Warning This requires recoll set up to index your notes directory. After running the command type in a query just like you would with Google , matches will be presented with an instant preview to the side. Press Ctrl + Q to toggle search inside the note for a string (there will not be highlighting) 1 Pressing Enter on a note will open it in the default app, 2 if you want to do something else with it copy the path to the clipboard with Alt + w as described below in Keyboard Shortcuts .","title":"How Do I use it"},{"location":"search.html#keyboard-shortcuts","text":"Keys Description PgUp / PgDn Scroll Preview Ctrl - w Copy Absolute path to note 3 Alt - w Copy Relative path to note Ctrl - o Open the note in the default app without exiting Alt - y Copy File Contents to Clipboard 4","title":"Keyboard Shortcuts"},{"location":"search.html#when-would-this-be-used","text":"Imagine you're sitting at your desk and this time you need to, solve a linear recurrence relation, you're solution is cadmus search and then type something like linear recursion then Ctrl - Q math mod .","title":"When Would This Be Used"},{"location":"search.html#example","text":"","title":"Example"},{"location":"search.html#how-does-it-work","text":"So essentially this just uses skim and bat to filter/preview the notes, the interactive command is used with ripgrep and piping (that took me forever to figure out!!) to highlight the match in the preview. 5 This is the code that achieves it: sk -m -i -c 'recoll -b -t -q \"ext:md\" {} |\\ cut -c 8- | sed s/^/realpath\\ \\\"/ |\\ sed s+\\$+\\\"\\ --relative-to\\ \\\"./\\\"+ | bash' \\ --bind pgup:preview-page-up,pgdn:preview-page-down \\ --preview \"bat --color=always --line-range :500 \\ --terminal-width 80 --theme=TwoDark {+} \\ --italic-text=always \\ --decorations=always\" \\ --color = fg:#f8f8f2,bg:-1,matched:#6272a4,current_fg:#50fa7b,current_bg:#381070,border:#ff79c6,prompt:#bd93f9,query:#bd93f9,marker:#f1fa8c,header:#f1fa8c The distinction between this and find is essentially the distinction between grep and a search engine. \u21a9 xdg-open / open on Linux/Mac respectively \u21a9 TODO: this only works on Xorg at the moment \u21a9 This is really good for Zulip / Discord \u21a9 This highlighting works with both bat and MDCat , I prefer MDCat but there is a bug with footnotes preventing me from being able to use it right at the moment. \u21a9","title":"How does it Work"},{"location":"Misc/Summary-Misc.html","text":"Note Start this with cadmus misc What does it do \u00b6 These are just miscellaneous tools that either open editors, relocate windows or sync with git. How Do I use it \u00b6 Run cadmus misc ... for whatever command. When Would This Be Used \u00b6 Much of this stuff is arbitrary things I found myself wanting to alias.","title":"Summary"},{"location":"Misc/Summary-Misc.html#what-does-it-do","text":"These are just miscellaneous tools that either open editors, relocate windows or sync with git.","title":"What does it do"},{"location":"Misc/Summary-Misc.html#how-do-i-use-it","text":"Run cadmus misc ... for whatever command.","title":"How Do I use it"},{"location":"Misc/Summary-Misc.html#when-would-this-be-used","text":"Much of this stuff is arbitrary things I found myself wanting to alias.","title":"When Would This Be Used"},{"location":"Misc/windows.html","text":"Note Start this with cadmus misc wa/wr What does it do \u00b6 This offers a fuzzy selection of windows just like rofi but in the terminal. How Do I use it \u00b6 Warning This requires wmctrl set up to index your notes directory. Run cadmus misc wa to activate a window or cadmus misc wr to relocate a window, a dialog will popup. Type to filter the popup and press Enter to activate that window. When Would This Be Used \u00b6 This is good for when you're looking for a window but you don't want to use rofi for one reason or another. Example \u00b6 TODO \u00b6 How does it Work \u00b6 This just uses wmctrl and fzf to filter through the windows like this: bash wmctrl -R \"$(wmctrl -l | cut -f 5- -d \" \" | fzf)\"","title":"Windows"},{"location":"Misc/windows.html#what-does-it-do","text":"This offers a fuzzy selection of windows just like rofi but in the terminal.","title":"What does it do"},{"location":"Misc/windows.html#how-do-i-use-it","text":"Warning This requires wmctrl set up to index your notes directory. Run cadmus misc wa to activate a window or cadmus misc wr to relocate a window, a dialog will popup. Type to filter the popup and press Enter to activate that window.","title":"How Do I use it"},{"location":"Misc/windows.html#when-would-this-be-used","text":"This is good for when you're looking for a window but you don't want to use rofi for one reason or another.","title":"When Would This Be Used"},{"location":"Misc/windows.html#example","text":"","title":"Example"},{"location":"Misc/windows.html#todo","text":"","title":"TODO"},{"location":"Misc/windows.html#how-does-it-work","text":"This just uses wmctrl and fzf to filter through the windows like this: bash wmctrl -R \"$(wmctrl -l | cut -f 5- -d \" \" | fzf)\"","title":"How does it Work"},{"location":"Tools/New.html","text":"New Note \u00b6","title":"New Note"},{"location":"Tools/New.html#new-note","text":"","title":"New Note"},{"location":"tags/Filter.html","text":"Note Start this with cadmus tags filter What does it do \u00b6 This concurrently filters your notes based on the tags that are in TMSU , it will be necessary to create tags in TMSU before doing this if the tags have changed. How Do I use it \u00b6 After running the command a list of tags that are currently in the tmsu database will be presented, press Enter to select an inital tag. From here the following will be displayed: Chosen Tags Matching Notes Concurrent Tags Further tags can be chosen to narrow down the search by pressing t or the currently selected tags can be accepted with Any key. After accepting the chosen tags with any key, all the files can be symlinked into /tmp , opened in VScode 1 or the find selecor can be started on the matches. When Would This Be Used \u00b6 This is great for when you're trying to collect all the knowledge you have on a particular topic when it isn't captured by your directory structure. (e.g. all notes on #programming may span many different directories) Example \u00b6 How does it Work \u00b6 I don't remember haha. Basically there is a bash function that finds tags in /TMSU/ and it's recursively called with t until any key is pressed. The chosen tags are subtracted from the concurrent tags by using comm : ConcurrentTags = \" $( comm -13 < ( echo \" $ChosenTags \" | sort ) <(echo \" $ConcurrentTags \" | sort))\" The relevant script is in bin/tags/FilterNotesByTMSUTag.sh This will probably change to the default app when I get time to look at it, just change it to whatever app you like in /bin/tags/FilterNotesByTMSUTag.sh \u21a9","title":"Filter"},{"location":"tags/Filter.html#what-does-it-do","text":"This concurrently filters your notes based on the tags that are in TMSU , it will be necessary to create tags in TMSU before doing this if the tags have changed.","title":"What does it do"},{"location":"tags/Filter.html#how-do-i-use-it","text":"After running the command a list of tags that are currently in the tmsu database will be presented, press Enter to select an inital tag. From here the following will be displayed: Chosen Tags Matching Notes Concurrent Tags Further tags can be chosen to narrow down the search by pressing t or the currently selected tags can be accepted with Any key. After accepting the chosen tags with any key, all the files can be symlinked into /tmp , opened in VScode 1 or the find selecor can be started on the matches.","title":"How Do I use it"},{"location":"tags/Filter.html#when-would-this-be-used","text":"This is great for when you're trying to collect all the knowledge you have on a particular topic when it isn't captured by your directory structure. (e.g. all notes on #programming may span many different directories)","title":"When Would This Be Used"},{"location":"tags/Filter.html#example","text":"","title":"Example"},{"location":"tags/Filter.html#how-does-it-work","text":"I don't remember haha. Basically there is a bash function that finds tags in /TMSU/ and it's recursively called with t until any key is pressed. The chosen tags are subtracted from the concurrent tags by using comm : ConcurrentTags = \" $( comm -13 < ( echo \" $ChosenTags \" | sort ) <(echo \" $ConcurrentTags \" | sort))\" The relevant script is in bin/tags/FilterNotesByTMSUTag.sh This will probably change to the default app when I get time to look at it, just change it to whatever app you like in /bin/tags/FilterNotesByTMSUTag.sh \u21a9","title":"How does it Work"},{"location":"tags/create.html","text":"Note Start this with cadmus tags create Warning The tags stuff is a work in progress* , it's a bit rough around the edges. What does it do \u00b6 This starts an interactive dialog to extract inline #tags as well as tags in a YAML header and pass them to TMSU . How Do I use it \u00b6 After running the command type a menu will be displayed, if there is no pre-existing TMSU database, press n to create one and then re-execute cadmus tags create . From there usually you will want to extract both types of tags so press b , cadmus will sync the tags between your notes and TMSU 1 When Would This Be Used \u00b6 This needs to be used every time your tags are changed in order to bring tmsu back in sync, otherwise when you look for tags it won't show the correct notes. Example \u00b6 How does it Work \u00b6 Hash tags \u00b6 Hash tags are easy, just use ripgrep with pcre2 : rg --pcre2 '(?<=\\s#)[a-zA-Z]+(?=\\s)' -t markdown -o $NOTE_DIR \\ | sed s+:+ \\ + | sed s/^/tmsu \\ tag \\ / YAML Tags \u00b6 This is a little more involved, it's essentially a couple of `for`` loops over the files, I did it in R first but it was too slow so I redid it in NodeJS , checkout these files for the source code: /bin/tags/yaml-parse.js /home/ryan/.cadmus/bin/tags/ListTags.R Integrating with Vim \u00b6 I put these lines in my .vimrc to generate a list and filter tags using FZF.vim: imap < expr > < C - c >< C - y > fzf# vim # complete ( 'node ~/bin/printMarkdownTags/yaml-parse.js $HOME/Notes/MD/notes \\| sort -u' ) imap < expr > < C - c >< C - t > fzf# vim # complete ( 'rg --pcre2 \"\\s#[a-zA-Z-@]+\\s\" -o --no-filename $HOME/Notes/MD -t md \\| sort -u' ) Dependencies \u00b6 This requires, TMSU, nodejs and ripgrep with pcre2. I played with the idea of avoiding TMSU but it works really well and the Virtual File System is really neat. \u21a9","title":"Create"},{"location":"tags/create.html#what-does-it-do","text":"This starts an interactive dialog to extract inline #tags as well as tags in a YAML header and pass them to TMSU .","title":"What does it do"},{"location":"tags/create.html#how-do-i-use-it","text":"After running the command type a menu will be displayed, if there is no pre-existing TMSU database, press n to create one and then re-execute cadmus tags create . From there usually you will want to extract both types of tags so press b , cadmus will sync the tags between your notes and TMSU 1","title":"How Do I use it"},{"location":"tags/create.html#when-would-this-be-used","text":"This needs to be used every time your tags are changed in order to bring tmsu back in sync, otherwise when you look for tags it won't show the correct notes.","title":"When Would This Be Used"},{"location":"tags/create.html#example","text":"","title":"Example"},{"location":"tags/create.html#how-does-it-work","text":"","title":"How does it Work"},{"location":"tags/create.html#hash-tags","text":"Hash tags are easy, just use ripgrep with pcre2 : rg --pcre2 '(?<=\\s#)[a-zA-Z]+(?=\\s)' -t markdown -o $NOTE_DIR \\ | sed s+:+ \\ + | sed s/^/tmsu \\ tag \\ /","title":"Hash tags"},{"location":"tags/create.html#yaml-tags","text":"This is a little more involved, it's essentially a couple of `for`` loops over the files, I did it in R first but it was too slow so I redid it in NodeJS , checkout these files for the source code: /bin/tags/yaml-parse.js /home/ryan/.cadmus/bin/tags/ListTags.R","title":"YAML Tags"},{"location":"tags/create.html#integrating-with-vim","text":"I put these lines in my .vimrc to generate a list and filter tags using FZF.vim: imap < expr > < C - c >< C - y > fzf# vim # complete ( 'node ~/bin/printMarkdownTags/yaml-parse.js $HOME/Notes/MD/notes \\| sort -u' ) imap < expr > < C - c >< C - t > fzf# vim # complete ( 'rg --pcre2 \"\\s#[a-zA-Z-@]+\\s\" -o --no-filename $HOME/Notes/MD -t md \\| sort -u' )","title":"Integrating with Vim"},{"location":"tags/create.html#dependencies","text":"This requires, TMSU, nodejs and ripgrep with pcre2. I played with the idea of avoiding TMSU but it works really well and the Virtual File System is really neat. \u21a9","title":"Dependencies"},{"location":"tools/BackLinks.html","text":"Note Start this with cadmus tools backlinks What does it do \u00b6 This takes a notes path from the clipboard and displays in the terminal any files that link to it using either: [markdown](./links.md) [[wiki-links]] How Do I use it \u00b6 Copy a note path to the clipboard then run cadmus tools backlinks , any notes that link to it will be displayed in the terminal. When Would This Be Used \u00b6 This is handy when you have some piece of code, somewhere, that you can't find but you're sure you linked to. Example \u00b6 How does it Work \u00b6 This is just more ripgrep : rg -e \"\\[.*\\]\\(.* $term \\.md\\)\" -e \"\\[\\[ $term \\]\\]\" -e \"\\[\\[ $term .*\\]\\]\" \\ ~/Notes/MD/notes \\ -t markdown -ol Note See the script in /bin/tools/List-Backlinks.sh","title":"Display Back Links"},{"location":"tools/BackLinks.html#what-does-it-do","text":"This takes a notes path from the clipboard and displays in the terminal any files that link to it using either: [markdown](./links.md) [[wiki-links]]","title":"What does it do"},{"location":"tools/BackLinks.html#how-do-i-use-it","text":"Copy a note path to the clipboard then run cadmus tools backlinks , any notes that link to it will be displayed in the terminal.","title":"How Do I use it"},{"location":"tools/BackLinks.html#when-would-this-be-used","text":"This is handy when you have some piece of code, somewhere, that you can't find but you're sure you linked to.","title":"When Would This Be Used"},{"location":"tools/BackLinks.html#example","text":"","title":"Example"},{"location":"tools/BackLinks.html#how-does-it-work","text":"This is just more ripgrep : rg -e \"\\[.*\\]\\(.* $term \\.md\\)\" -e \"\\[\\[ $term \\]\\]\" -e \"\\[\\[ $term .*\\]\\]\" \\ ~/Notes/MD/notes \\ -t markdown -ol Note See the script in /bin/tools/List-Backlinks.sh","title":"How does it Work"},{"location":"tools/New.html","text":"Note Start this with cadmus tools new What does it do \u00b6 This provides a dialog that sets the title, heading and filename of a note, offers tags to apply and offers fuzzy search for the appropriate directory to save the note in. How Do I use it \u00b6 After running the command multiple tags will be displayed, filter the tags by typing and use Tab to selet multiple tags and Enter to continue. Next a directory list will be presented, search through the directories by typing in the name of a directory. Finally a dialog to type in a name for the title, heading and filename (which will be made to be identical) will be offered, type in title: Spaces are fine No extension The file name will be slugified with - and the extension .md will be applied. When Would This Be Used \u00b6 This is great when you want to quickly make a new note in the right place with the right tags. Example \u00b6 How does it Work \u00b6 This just uses TMSU and Skim to choose the directories and tags.","title":"New Note"},{"location":"tools/New.html#what-does-it-do","text":"This provides a dialog that sets the title, heading and filename of a note, offers tags to apply and offers fuzzy search for the appropriate directory to save the note in.","title":"What does it do"},{"location":"tools/New.html#how-do-i-use-it","text":"After running the command multiple tags will be displayed, filter the tags by typing and use Tab to selet multiple tags and Enter to continue. Next a directory list will be presented, search through the directories by typing in the name of a directory. Finally a dialog to type in a name for the title, heading and filename (which will be made to be identical) will be offered, type in title: Spaces are fine No extension The file name will be slugified with - and the extension .md will be applied.","title":"How Do I use it"},{"location":"tools/New.html#when-would-this-be-used","text":"This is great when you want to quickly make a new note in the right place with the right tags.","title":"When Would This Be Used"},{"location":"tools/New.html#example","text":"","title":"Example"},{"location":"tools/New.html#how-does-it-work","text":"This just uses TMSU and Skim to choose the directories and tags.","title":"How does it Work"},{"location":"tools/Summary.html","text":"Summary \u00b6 Note I intend to write up more documentation as time permits, University keeps me busy though. Command Description fix This interactively repairs a relative link, that is broken, from the clipboard link This provides an dialog to generate links between files. page-import This replaces a URL in the clipboard with markdown converted from the website random This opens a random page in the default .md app rename This renames a note and uses sed to fix any links","title":"Summary"},{"location":"tools/Summary.html#summary","text":"Note I intend to write up more documentation as time permits, University keeps me busy though. Command Description fix This interactively repairs a relative link, that is broken, from the clipboard link This provides an dialog to generate links between files. page-import This replaces a URL in the clipboard with markdown converted from the website random This opens a random page in the default .md app rename This renames a note and uses sed to fix any links","title":"Summary"},{"location":"tools/webtitle.html","text":"Note Start this with cadmus tools webtitle What does it do \u00b6 This transforms a URL in the clipboard into a formatted link How Do I use it \u00b6 Copy / Paste a URL then type cadmus tools webtitle , the clipboard should be transformed into a formatted link with the right title. When Would This Be Used \u00b6 This is great for footnotes. Example \u00b6 How does it Work \u00b6 So essentially this just uses skim and bat to filter/preview the notes, the interactive command is used with ripgrep and piping (that took me forever to figure out!!) to highlight the match in the preview. 1 This is the code that achieves it: sk -m -i -c 'recoll -b -t -q \"ext:md\" {} |\\ cut -c 8- | sed s/^/realpath\\ \\\"/ |\\ sed s+\\$+\\\"\\ --relative-to\\ \\\"./\\\"+ | bash' \\ --bind pgup:preview-page-up,pgdn:preview-page-down \\ --preview \"bat --color=always --line-range :500 \\ --terminal-width 80 --theme=TwoDark {+} \\ --italic-text=always \\ --decorations=always\" \\ --color = fg:#f8f8f2,bg:-1,matched:#6272a4,current_fg:#50fa7b,current_bg:#381070,border:#ff79c6,prompt:#bd93f9,query:#bd93f9,marker:#f1fa8c,header:#f1fa8c This highlighting works with both bat and MDCat , I prefer MDCat but there is a bug with footnotes preventing me from being able to use it right at the moment. \u21a9","title":"Print Web Title"},{"location":"tools/webtitle.html#what-does-it-do","text":"This transforms a URL in the clipboard into a formatted link","title":"What does it do"},{"location":"tools/webtitle.html#how-do-i-use-it","text":"Copy / Paste a URL then type cadmus tools webtitle , the clipboard should be transformed into a formatted link with the right title.","title":"How Do I use it"},{"location":"tools/webtitle.html#when-would-this-be-used","text":"This is great for footnotes.","title":"When Would This Be Used"},{"location":"tools/webtitle.html#example","text":"","title":"Example"},{"location":"tools/webtitle.html#how-does-it-work","text":"So essentially this just uses skim and bat to filter/preview the notes, the interactive command is used with ripgrep and piping (that took me forever to figure out!!) to highlight the match in the preview. 1 This is the code that achieves it: sk -m -i -c 'recoll -b -t -q \"ext:md\" {} |\\ cut -c 8- | sed s/^/realpath\\ \\\"/ |\\ sed s+\\$+\\\"\\ --relative-to\\ \\\"./\\\"+ | bash' \\ --bind pgup:preview-page-up,pgdn:preview-page-down \\ --preview \"bat --color=always --line-range :500 \\ --terminal-width 80 --theme=TwoDark {+} \\ --italic-text=always \\ --decorations=always\" \\ --color = fg:#f8f8f2,bg:-1,matched:#6272a4,current_fg:#50fa7b,current_bg:#381070,border:#ff79c6,prompt:#bd93f9,query:#bd93f9,marker:#f1fa8c,header:#f1fa8c This highlighting works with both bat and MDCat , I prefer MDCat but there is a bug with footnotes preventing me from being able to use it right at the moment. \u21a9","title":"How does it 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