Merge pull request #13 from yarlson/force

fix(init): prevent data loss when reinitializing with existing content

.github/dependabot.yml

@@ -0,0 +1,17 @@
+# https://docs.github.com/en/code-security/dependabot/dependabot-version-updates/optimizing-pr-creation-version-updates#setting-up-a-cooldown-period-for-dependency-updates
+
+version: 2
+updates:
+  - package-ecosystem: github-actions
+    directory: /
+    schedule:
+      interval: weekly
+    # https://docs.github.com/en/code-security/dependabot/working-with-dependabot/dependabot-options-reference#groups--
+    groups:
+      actions:
+        # Combine all images of last week
+        patterns: ["*"]
+  - package-ecosystem: gomod
+    directory: /
+    schedule:
+      interval: weekly

.github/workflows/ci.yml

@@ -6,6 +6,12 @@ on:
   pull_request:
     branches: [ main ]
 
+permissions:
+  contents: read
+
+env:
+  GO_VERSION: '1.24'
+
 jobs:
   test:
     runs-on: ubuntu-latest
@@ -16,10 +22,10 @@ jobs:
       - name: Set up Go
         uses: actions/setup-go@v5
         with:
-          go-version: '1.24'
+          go-version: ${{ env.GO_VERSION }}
 
       - name: Cache Go modules
-        uses: actions/cache@v3
+        uses: actions/cache@v4
         with:
           path: ~/go/pkg/mod
           key: ${{ runner.os }}-go-${{ hashFiles('**/go.sum') }}
@@ -38,12 +44,12 @@ jobs:
         run: go vet ./...
 
       - name: Test
-        run: go test -v -race -coverprofile=coverage.out ./test
+        run: go test -v -race -coverprofile=coverage.out ./...
 
       - name: Upload coverage to Codecov
-        uses: codecov/codecov-action@v3
+        uses: codecov/codecov-action@v5
         with:
-          file: ./coverage.out
+          files: ./coverage.out
 
   lint:
     runs-on: ubuntu-latest
@@ -54,10 +60,10 @@ jobs:
       - name: Set up Go
         uses: actions/setup-go@v5
         with:
-          go-version: '1.24'
+          go-version: ${{ env.GO_VERSION }}
 
       - name: golangci-lint
-        uses: golangci/golangci-lint-action@v3
+        uses: golangci/golangci-lint-action@v8
         with:
           version: latest
 
@@ -71,7 +77,7 @@ jobs:
       - name: Set up Go
         uses: actions/setup-go@v5
         with:
-          go-version: '1.24'
+          go-version: ${{ env.GO_VERSION }}
 
       - name: Build
         run: go build -v ./...

.github/workflows/release.yml

@@ -23,7 +23,7 @@ jobs:
           go-version: '1.24'
 
       - name: Run tests
-        run: go test ./test
+        run: go test ./...
 
       - name: Run GoReleaser
         uses: goreleaser/goreleaser-action@v6

.gitignore

@@ -44,3 +44,6 @@ desktop.ini
 
 # GoReleaser artifacts
 goreleaser/
+*.md
+!/README.md
+!/RELEASE.md

Makefile

@@ -60,19 +60,19 @@ build:
 ## test: Run tests
 test:
 	@echo "$(BLUE)Running tests...$(NC)"
-	@go test ./test
+	@go test ./...
 	@echo "$(GREEN)✓ Tests passed$(NC)"
 
 ## test-v: Run tests with verbose output
 test-v:
 	@echo "$(BLUE)Running tests (verbose)...$(NC)"
-	@go test -v ./test
+	@go test -v ./...
 
 ## test-cover: Run tests with coverage
 test-cover:
 	@echo "$(BLUE)Running tests with coverage...$(NC)"
-	@go test -v -cover ./test
+	@go test -v -cover ./...
-	@go test -coverprofile=coverage.out ./test
+	@go test -coverprofile=coverage.out ./
 	@go tool cover -html=coverage.out -o coverage.html
 	@echo "$(GREEN)✓ Coverage report generated: coverage.html$(NC)"
 

README.md

@@ -2,11 +2,18 @@
 
 **Git-native dotfiles management that doesn't suck.**
 
-Move your dotfiles to `~/.config/lnk`, symlink them back, and use Git like normal. That's it.
+Lnk makes managing your dotfiles straightforward, no tedious setups, no complex configurations. Just tell Lnk what files you want tracked, and it'll automatically move them into a tidy Git repository under `~/.config/lnk`. It then creates clean, portable symlinks back to their original locations. Easy.
+
+Why bother with Lnk instead of plain old Git or other dotfile managers? Unlike traditional methods, Lnk automates the boring parts: safely relocating files, handling host-specific setups, bulk operations for multiple files, recursive directory processing, and even running your custom bootstrap scripts automatically. This means fewer manual steps and less chance of accidentally overwriting something important.
+
+With Lnk, your dotfiles setup stays organized and effortlessly portable, letting you spend more time doing real work, not wrestling with configuration files.
 
 ```bash
-lnk init
+lnk init -r git@github.com:user/dotfiles.git    # Clones & runs bootstrap automatically
-lnk add ~/.vimrc ~/.bashrc
+lnk add ~/.vimrc ~/.bashrc ~/.gitconfig         # Multiple files at once
+lnk add --recursive ~/.config/nvim              # Process directory contents
+lnk add --dry-run ~/.tmux.conf                  # Preview changes first
+lnk add --host work ~/.ssh/config               # Host-specific config
 lnk push "setup"
 ```
 
@@ -19,7 +26,6 @@ curl -sSL https://raw.githubusercontent.com/yarlson/lnk/main/install.sh | bash
 
 ```bash
 # Homebrew (macOS/Linux)
-brew tap yarlson/lnk
 brew install lnk
 ```
 
@@ -42,107 +48,322 @@ git clone https://github.com/yarlson/lnk.git && cd lnk && go build . && sudo mv
 # Fresh start
 lnk init
 
-# With existing repo
+# With existing repo (runs bootstrap automatically)
 lnk init -r git@github.com:user/dotfiles.git
+
+# Skip automatic bootstrap
+lnk init -r git@github.com:user/dotfiles.git --no-bootstrap
+
+# Force initialization (WARNING: overwrites existing managed files)
+lnk init -r git@github.com:user/dotfiles.git --force
+
+# Run bootstrap script manually
+lnk bootstrap
 ```
 
 ### Daily workflow
 
 ```bash
-# Add files/directories
+# Add multiple files at once (common config)
-lnk add ~/.vimrc ~/.config/nvim ~/.gitconfig
+lnk add ~/.vimrc ~/.bashrc ~/.gitconfig ~/.tmux.conf
+
+# Add directory contents individually
+lnk add --recursive ~/.config/nvim ~/.config/zsh
+
+# Preview changes before applying
+lnk add --dry-run ~/.config/git/config
+lnk add --dry-run --recursive ~/.config/kitty
+
+# Add host-specific files (supports bulk operations)
+lnk add --host laptop ~/.ssh/config ~/.aws/credentials
+lnk add --host work ~/.gitconfig ~/.ssh/config
+
+# List managed files
+lnk list                    # Common config only
+lnk list --host laptop      # Laptop-specific config
+lnk list --all              # All configurations
 
 # Check status
 lnk status
 
 # Sync changes
 lnk push "updated vim config"
-lnk pull
+lnk pull                    # Pull common config
+lnk pull --host laptop      # Pull laptop-specific config
 ```
 
 ## How it works
 
 ```
+Common files:
 Before: ~/.vimrc (file)
 After:  ~/.vimrc -> ~/.config/lnk/.vimrc (symlink)
+
+Host-specific files:
+Before: ~/.ssh/config (file)
+After:  ~/.ssh/config -> ~/.config/lnk/laptop.lnk/.ssh/config (symlink)
 ```
 
-Your files live in `~/.config/lnk` (a Git repo). Lnk creates symlinks back to original locations. Edit files normally, use Git normally.
+Your files live in `~/.config/lnk` (a Git repo). Common files go in the root, host-specific files go in `<host>.lnk/` subdirectories. Lnk creates symlinks back to original locations. Edit files normally, use Git normally.
+
+## Safety Features
+
+Lnk includes built-in safety checks to prevent accidental data loss:
+
+### Data Loss Prevention
+
+```bash
+# This will be blocked if you already have managed files
+lnk init -r git@github.com:user/dotfiles.git
+# ❌ Directory ~/.config/lnk already contains managed files
+#    💡 Use 'lnk pull' to update from remote instead of 'lnk init -r'
+
+# Use pull instead to safely update
+lnk pull
+
+# Or force if you understand the risks (shows warning only when needed)
+lnk init -r git@github.com:user/dotfiles.git --force
+# ⚠️  Using --force flag: This will overwrite existing managed files
+#    💡 Only use this if you understand the risks
+```
+
+### Smart Warnings
+
+- **Contextual alerts**: Warnings only appear when there are actually managed files to overwrite
+- **Clear guidance**: Error messages suggest the correct command to use
+- **Force override**: Advanced users can bypass safety checks when needed
+
+## Bootstrap Support
+
+Lnk automatically runs bootstrap scripts when cloning dotfiles repositories, making it easy to set up your development environment. Just add a `bootstrap.sh` file to your dotfiles repo.
+
+### Examples
+
+**Simple bootstrap script:**
+
+```bash
+#!/bin/bash
+# bootstrap.sh
+echo "Setting up development environment..."
+
+# Install Homebrew (macOS)
+if ! command -v brew &> /dev/null; then
+    /bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/HEAD/install.sh)"
+fi
+
+# Install packages
+brew install git vim tmux
+
+echo "✅ Setup complete!"
+```
+
+**Usage:**
+
+```bash
+# Automatic bootstrap on clone
+lnk init -r git@github.com:you/dotfiles.git
+# → Clones repo and runs bootstrap script automatically
+
+# Skip bootstrap if needed
+lnk init -r git@github.com:you/dotfiles.git --no-bootstrap
+
+# Run bootstrap manually later
+lnk bootstrap
+```
+
+## Multihost Support
+
+Lnk supports both **common configurations** (shared across all machines) and **host-specific configurations** (unique per machine).
+
+### File Organization
+
+```
+~/.config/lnk/
+├── .lnk                    # Tracks common files
+├── .lnk.laptop             # Tracks laptop-specific files
+├── .lnk.work               # Tracks work-specific files
+├── .vimrc                  # Common file
+├── .gitconfig              # Common file
+├── laptop.lnk/             # Laptop-specific storage
+│   ├── .ssh/
+│   │   └── config
+│   └── .tmux.conf
+└── work.lnk/               # Work-specific storage
+    ├── .ssh/
+    │   └── config
+    └── .gitconfig
+```
+
+### Usage Patterns
+
+```bash
+# Common config (shared everywhere) - supports multiple files
+lnk add ~/.vimrc ~/.bashrc ~/.gitconfig ~/.tmux.conf
+
+# Process directory contents individually
+lnk add --recursive ~/.config/nvim ~/.config/zsh
+
+# Preview operations before making changes
+lnk add --dry-run ~/.config/alacritty/alacritty.yml
+lnk add --dry-run --recursive ~/.config/i3
+
+# Host-specific config (unique per machine) - supports bulk operations
+lnk add --host $(hostname) ~/.ssh/config ~/.aws/credentials
+lnk add --host work ~/.gitconfig ~/.npmrc
+
+# List configurations
+lnk list                    # Common only
+lnk list --host work        # Work host only
+lnk list --all              # Everything
+
+# Pull configurations
+lnk pull                    # Common config
+lnk pull --host work        # Work-specific config
+```
 
 ## Why not just Git?
 
 You could `git init ~/.config/lnk` and manually symlink everything. Lnk just automates the tedious parts:
 
-- Moving files safely
+- Moving files safely (with atomic operations)
 - Creating relative symlinks
-- Handling conflicts
+- Handling conflicts and rollback
 - Tracking what's managed
+- Processing multiple files efficiently
+- Recursive directory traversal
+- Preview mode for safety
 
 ## Examples
 
 ### First time setup
 
 ```bash
+# Clone dotfiles and run bootstrap automatically
 lnk init -r git@github.com:you/dotfiles.git
-lnk add ~/.bashrc ~/.vimrc ~/.gitconfig
+# → Downloads dependencies, installs packages, configures environment
+
+# Add common config (shared across all machines) - multiple files at once
+lnk add ~/.bashrc ~/.vimrc ~/.gitconfig ~/.tmux.conf
+
+# Add configuration directories individually
+lnk add --recursive ~/.config/nvim ~/.config/zsh
+
+# Preview before adding sensitive files
+lnk add --dry-run ~/.ssh/id_rsa.pub
+lnk add ~/.ssh/id_rsa.pub  # Add after verification
+
+# Add host-specific config (supports bulk operations)
+lnk add --host $(hostname) ~/.ssh/config ~/.aws/credentials
+
 lnk push "initial setup"
 ```
 
 ### On a new machine
 
 ```bash
+# Bootstrap runs automatically
 lnk init -r git@github.com:you/dotfiles.git
-lnk pull  # auto-creates symlinks
+# → Sets up environment, installs dependencies
+
+# Pull common config
+lnk pull
+
+# Pull host-specific config (if it exists)
+lnk pull --host $(hostname)
+
+# Or run bootstrap manually if needed
+lnk bootstrap
 ```
 
 ### Daily edits
 
 ```bash
-vim ~/.vimrc           # edit normally
+vim ~/.vimrc                    # edit normally
-lnk status             # check what changed
+lnk list                        # see common config
-lnk push "new plugins" # commit & push
+lnk list --host $(hostname)     # see host-specific config
+lnk list --all                  # see everything
+lnk status                      # check what changed
+lnk push "new plugins"          # commit & push
+```
+
+### Multi-machine workflow
+
+```bash
+# On your laptop - use bulk operations for efficiency
+lnk add --host laptop ~/.ssh/config ~/.aws/credentials ~/.npmrc
+lnk add ~/.vimrc ~/.bashrc ~/.gitconfig    # Common config (multiple files)
+lnk push "laptop configuration"
+
+# On your work machine
+lnk pull                                   # Get common config
+lnk add --host work ~/.gitconfig ~/.ssh/config
+lnk add --recursive ~/.config/work-tools  # Work-specific tools
+lnk push "work configuration"
+
+# Back on laptop
+lnk pull                                   # Get updates (work config won't affect laptop)
 ```
 
 ## Commands
 
-- `lnk init [-r remote]` - Create repo
+- `lnk init [-r remote] [--no-bootstrap] [--force]` - Create repo (runs bootstrap automatically)
-- `lnk add <files>` - Move files to repo, create symlinks
+- `lnk add [--host HOST] [--recursive] [--dry-run] <files>...` - Move files to repo, create symlinks
-- `lnk rm <files>` - Move files back, remove symlinks
+- `lnk rm [--host HOST] <files>` - Move files back, remove symlinks
+- `lnk list [--host HOST] [--all]` - List files managed by lnk
 - `lnk status` - Git status + sync info
 - `lnk push [msg]` - Stage all, commit, push
-- `lnk pull` - Pull + restore missing symlinks
+- `lnk pull [--host HOST]` - Pull + restore missing symlinks
+- `lnk bootstrap` - Run bootstrap script manually
+
+### Command Options
+
+- `--host HOST` - Manage files for specific host (default: common configuration)
+- `--recursive, -r` - Add directory contents individually instead of the directory as a whole
+- `--dry-run, -n` - Show what would be added without making changes
+- `--all` - Show all configurations (common + all hosts) when listing
+- `-r, --remote URL` - Clone from remote URL when initializing
+- `--no-bootstrap` - Skip automatic execution of bootstrap script after cloning
+- `--force` - Force initialization even if directory contains managed files (WARNING: overwrites existing content)
+
+### Add Command Examples
+
+```bash
+# Multiple files at once
+lnk add ~/.bashrc ~/.vimrc ~/.gitconfig
+
+# Recursive directory processing
+lnk add --recursive ~/.config/nvim
+
+# Preview changes first
+lnk add --dry-run ~/.ssh/config
+lnk add --dry-run --recursive ~/.config/kitty
+
+# Host-specific bulk operations
+lnk add --host work ~/.gitconfig ~/.ssh/config ~/.npmrc
+```
 
 ## Technical bits
 
 - **Single binary** (~8MB, no deps)
-- **Atomic operations** (rollback on failure)
 - **Relative symlinks** (portable)
 - **XDG compliant** (`~/.config/lnk`)
-- **20 integration tests**
+- **Multihost support** (common + host-specific configs)
+- **Bootstrap support** (automatic environment setup)
+- **Bulk operations** (multiple files, atomic transactions)
+- **Recursive processing** (directory contents individually)
+- **Preview mode** (dry-run for safety)
+- **Data loss prevention** (safety checks with contextual warnings)
+- **Git-native** (standard Git repo, no special formats)
 
 ## Alternatives
 
-| Tool    | Complexity | Why choose it                         |
+| Tool    | Complexity | Why choose it                                                                             |
-| ------- | ---------- | ------------------------------------- |
+| ------- | ---------- | ----------------------------------------------------------------------------------------- |
-| **lnk** | Minimal    | Just works, no config, Git-native     |
+| **lnk** | Minimal    | Just works, no config, Git-native, multihost, bootstrap, bulk ops, dry-run, safety checks |
-| chezmoi | High       | Templates, encryption, cross-platform |
+| chezmoi | High       | Templates, encryption, cross-platform                                                     |
-| yadm    | Medium     | Git power user, encryption            |
+| yadm    | Medium     | Git power user, encryption                                                                |
-| dotbot  | Low        | YAML config, basic features           |
+| dotbot  | Low        | YAML config, basic features                                                               |
-| stow    | Low        | Perl, symlink only                    |
+| stow    | Low        | Perl, symlink only                                                                        |
-
-## FAQ
-
-**Q: What if I already have dotfiles in Git?**  
-A: `git clone your-repo ~/.config/lnk && lnk add ~/.vimrc` (adopts existing files)
-
-**Q: How do I handle machine-specific configs?**  
-A: Git branches, or just don't manage machine-specific files with lnk
-
-**Q: Windows support?**  
-A: Symlinks work on Windows 10+, but untested
-
-**Q: Production ready?**  
-A: I use it daily. It won't break your files. API might change (pre-1.0).
 
 ## Contributing
 

cmd/add.go

@@ -1,35 +1,164 @@
 package cmd
 
 import (
-	"fmt"
 	"path/filepath"
 
 	"github.com/spf13/cobra"
 	"github.com/yarlson/lnk/internal/core"
 )
 
-var addCmd = &cobra.Command{
+func newAddCmd() *cobra.Command {
-	Use:          "add <file>",
+	cmd := &cobra.Command{
-	Short:        "✨ Add a file to lnk management",
+		Use:   "add <file>...",
-	Long:         "Moves a file to the lnk repository and creates a symlink in its place.",
+		Short: "✨ Add files to lnk management",
-	Args:         cobra.ExactArgs(1),
+		Long: `Moves files to the lnk repository and creates symlinks in their place. Supports multiple files.
-	SilenceUsage: true,
-	RunE: func(cmd *cobra.Command, args []string) error {
-		filePath := args[0]
 
-		lnk := core.NewLnk()
+Examples:
-		if err := lnk.Add(filePath); err != nil {
+  lnk add ~/.bashrc ~/.vimrc          # Add multiple files at once
-			return fmt.Errorf("failed to add file: %w", err)
+  lnk add --recursive ~/.config/nvim  # Add directory contents individually  
-		}
+  lnk add --dry-run ~/.gitconfig      # Preview what would be added
+  lnk add --host work ~/.ssh/config   # Add host-specific configuration
 
-		basename := filepath.Base(filePath)
+The --recursive flag processes directory contents individually instead of treating 
-		fmt.Printf("✨ \033[1mAdded %s to lnk\033[0m\n", basename)
+the directory as a single unit. This is useful for configuration directories where
-		fmt.Printf("   🔗 \033[90m%s\033[0m → \033[36m~/.config/lnk/%s\033[0m\n", filePath, basename)
+you want each file managed separately.
-		fmt.Printf("   📝 Use \033[1mlnk push\033[0m to sync to remote\n")
+
-		return nil
+The --dry-run flag shows you exactly what files would be added without making any
-	},
+changes to your system - perfect for verification before bulk operations.`,
-}
+		Args:          cobra.MinimumNArgs(1),
-
+		SilenceUsage:  true,
-func init() {
+		SilenceErrors: true,
-	rootCmd.AddCommand(addCmd)
+		RunE: func(cmd *cobra.Command, args []string) error {
+			host, _ := cmd.Flags().GetString("host")
+			recursive, _ := cmd.Flags().GetBool("recursive")
+			dryRun, _ := cmd.Flags().GetBool("dry-run")
+			lnk := core.NewLnk(core.WithHost(host))
+
+			// Handle dry-run mode
+			if dryRun {
+				files, err := lnk.PreviewAdd(args, recursive)
+				if err != nil {
+					return err
+				}
+
+				// Display preview output
+				if recursive {
+					printf(cmd, "🔍 \033[1mWould add %d files recursively:\033[0m\n", len(files))
+				} else {
+					printf(cmd, "🔍 \033[1mWould add %d files:\033[0m\n", len(files))
+				}
+
+				// List files that would be added
+				for _, file := range files {
+					basename := filepath.Base(file)
+					printf(cmd, "   📄 \033[90m%s\033[0m\n", basename)
+				}
+
+				printf(cmd, "\n💡 \033[33mTo proceed:\033[0m run without --dry-run flag\n")
+				return nil
+			}
+
+			// Handle recursive mode
+			if recursive {
+				// Get preview to count files first for better output
+				previewFiles, err := lnk.PreviewAdd(args, recursive)
+				if err != nil {
+					return err
+				}
+
+				// Create progress callback for CLI display
+				progressCallback := func(current, total int, currentFile string) {
+					printf(cmd, "\r⏳ Processing %d/%d: %s", current, total, currentFile)
+				}
+
+				if err := lnk.AddRecursiveWithProgress(args, progressCallback); err != nil {
+					return err
+				}
+
+				// Clear progress line and show completion
+				printf(cmd, "\r")
+
+				// Store processed file count for display
+				args = previewFiles // Replace args with actual files for display
+			} else {
+				// Use appropriate method based on number of files
+				if len(args) == 1 {
+					// Single file - use existing Add method for backward compatibility
+					if err := lnk.Add(args[0]); err != nil {
+						return err
+					}
+				} else {
+					// Multiple files - use AddMultiple for atomic operation
+					if err := lnk.AddMultiple(args); err != nil {
+						return err
+					}
+				}
+			}
+
+			// Display results
+			if recursive {
+				// Recursive mode - show enhanced message with count
+				if host != "" {
+					printf(cmd, "✨ \033[1mAdded %d files recursively to lnk (host: %s)\033[0m\n", len(args), host)
+				} else {
+					printf(cmd, "✨ \033[1mAdded %d files recursively to lnk\033[0m\n", len(args))
+				}
+
+				// Show some of the files that were added (limit to first few for readability)
+				filesToShow := len(args)
+				if filesToShow > 5 {
+					filesToShow = 5
+				}
+
+				for i := 0; i < filesToShow; i++ {
+					basename := filepath.Base(args[i])
+					if host != "" {
+						printf(cmd, "   🔗 \033[90m%s\033[0m → \033[36m~/.config/lnk/%s.lnk/...\033[0m\n", basename, host)
+					} else {
+						printf(cmd, "   🔗 \033[90m%s\033[0m → \033[36m~/.config/lnk/...\033[0m\n", basename)
+					}
+				}
+
+				if len(args) > 5 {
+					printf(cmd, "   \033[90m... and %d more files\033[0m\n", len(args)-5)
+				}
+			} else if len(args) == 1 {
+				// Single file - maintain existing output format for backward compatibility
+				filePath := args[0]
+				basename := filepath.Base(filePath)
+				if host != "" {
+					printf(cmd, "✨ \033[1mAdded %s to lnk (host: %s)\033[0m\n", basename, host)
+					printf(cmd, "   🔗 \033[90m%s\033[0m → \033[36m~/.config/lnk/%s.lnk/%s\033[0m\n", filePath, host, filePath)
+				} else {
+					printf(cmd, "✨ \033[1mAdded %s to lnk\033[0m\n", basename)
+					printf(cmd, "   🔗 \033[90m%s\033[0m → \033[36m~/.config/lnk/%s\033[0m\n", filePath, filePath)
+				}
+			} else {
+				// Multiple files - show summary
+				if host != "" {
+					printf(cmd, "✨ \033[1mAdded %d items to lnk (host: %s)\033[0m\n", len(args), host)
+				} else {
+					printf(cmd, "✨ \033[1mAdded %d items to lnk\033[0m\n", len(args))
+				}
+
+				// List each added file
+				for _, filePath := range args {
+					basename := filepath.Base(filePath)
+					if host != "" {
+						printf(cmd, "   🔗 \033[90m%s\033[0m → \033[36m~/.config/lnk/%s.lnk/...\033[0m\n", basename, host)
+					} else {
+						printf(cmd, "   🔗 \033[90m%s\033[0m → \033[36m~/.config/lnk/...\033[0m\n", basename)
+					}
+				}
+			}
+
+			printf(cmd, "   📝 Use \033[1mlnk push\033[0m to sync to remote\n")
+			return nil
+		},
+	}
+
+	cmd.Flags().StringP("host", "H", "", "Manage file for specific host (default: common configuration)")
+	cmd.Flags().BoolP("recursive", "r", false, "Add directory contents individually instead of the directory as a whole")
+	cmd.Flags().BoolP("dry-run", "n", false, "Show what would be added without making changes")
+	return cmd
 }

cmd/bootstrap.go

@@ -0,0 +1,45 @@
+package cmd
+
+import (
+	"github.com/spf13/cobra"
+	"github.com/yarlson/lnk/internal/core"
+)
+
+func newBootstrapCmd() *cobra.Command {
+	return &cobra.Command{
+		Use:           "bootstrap",
+		Short:         "🚀 Run the bootstrap script to set up your environment",
+		Long:          "Executes the bootstrap script from your dotfiles repository to install dependencies and configure your system.",
+		SilenceUsage:  true,
+		SilenceErrors: true,
+		RunE: func(cmd *cobra.Command, args []string) error {
+			lnk := core.NewLnk()
+
+			scriptPath, err := lnk.FindBootstrapScript()
+			if err != nil {
+				return err
+			}
+
+			if scriptPath == "" {
+				printf(cmd, "💡 \033[33mNo bootstrap script found\033[0m\n")
+				printf(cmd, "   📝 Create a \033[1mbootstrap.sh\033[0m file in your dotfiles repository:\n")
+				printf(cmd, "      \033[90m#!/bin/bash\033[0m\n")
+				printf(cmd, "      \033[90mecho \"Setting up environment...\"\033[0m\n")
+				printf(cmd, "      \033[90m# Your setup commands here\033[0m\n")
+				return nil
+			}
+
+			printf(cmd, "🚀 \033[1mRunning bootstrap script\033[0m\n")
+			printf(cmd, "   📄 Script: \033[36m%s\033[0m\n", scriptPath)
+			printf(cmd, "\n")
+
+			if err := lnk.RunBootstrapScript(scriptPath); err != nil {
+				return err
+			}
+
+			printf(cmd, "\n✅ \033[1;32mBootstrap completed successfully!\033[0m\n")
+			printf(cmd, "   🎉 Your environment is ready to use\n")
+			return nil
+		},
+	}
+}

cmd/init.go

@@ -1,45 +1,82 @@
 package cmd
 
 import (
-	"fmt"
-
 	"github.com/spf13/cobra"
 	"github.com/yarlson/lnk/internal/core"
 )
 
-var initCmd = &cobra.Command{
+func newInitCmd() *cobra.Command {
-	Use:          "init",
+	cmd := &cobra.Command{
-	Short:        "🎯 Initialize a new lnk repository",
+		Use:           "init",
-	Long:         "Creates the lnk directory and initializes a Git repository for managing dotfiles.",
+		Short:         "🎯 Initialize a new lnk repository",
-	SilenceUsage: true,
+		Long:          "Creates the lnk directory and initializes a Git repository for managing dotfiles.",
-	RunE: func(cmd *cobra.Command, args []string) error {
+		SilenceUsage:  true,
-		remote, _ := cmd.Flags().GetString("remote")
+		SilenceErrors: true,
+		RunE: func(cmd *cobra.Command, args []string) error {
+			remote, _ := cmd.Flags().GetString("remote")
+			noBootstrap, _ := cmd.Flags().GetBool("no-bootstrap")
+			force, _ := cmd.Flags().GetBool("force")
 
-		lnk := core.NewLnk()
+			lnk := core.NewLnk()
-		if err := lnk.InitWithRemote(remote); err != nil {
-			return fmt.Errorf("failed to initialize lnk: %w", err)
-		}
 
-		if remote != "" {
+			// Show warning when force is used and there are managed files to overwrite
-			fmt.Printf("🎯 \033[1mInitialized lnk repository\033[0m\n")
+			if force && remote != "" && lnk.HasUserContent() {
-			fmt.Printf("   📦 Cloned from: \033[36m%s\033[0m\n", remote)
+				printf(cmd, "⚠️  \033[33mUsing --force flag: This will overwrite existing managed files\033[0m\n")
-			fmt.Printf("   📁 Location: \033[90m~/.config/lnk\033[0m\n")
+				printf(cmd, "   💡 Only use this if you understand the risks\n\n")
-			fmt.Printf("\n💡 \033[33mNext steps:\033[0m\n")
+			}
-			fmt.Printf("   • Run \033[1mlnk pull\033[0m to restore symlinks\n")
-			fmt.Printf("   • Use \033[1mlnk add <file>\033[0m to manage new files\n")
-		} else {
-			fmt.Printf("🎯 \033[1mInitialized empty lnk repository\033[0m\n")
-			fmt.Printf("   📁 Location: \033[90m~/.config/lnk\033[0m\n")
-			fmt.Printf("\n💡 \033[33mNext steps:\033[0m\n")
-			fmt.Printf("   • Run \033[1mlnk add <file>\033[0m to start managing dotfiles\n")
-			fmt.Printf("   • Add a remote with: \033[1mgit remote add origin <url>\033[0m\n")
-		}
 
-		return nil
+			if err := lnk.InitWithRemoteForce(remote, force); err != nil {
-	},
+				return err
-}
+			}
-
+
-func init() {
+			if remote != "" {
-	initCmd.Flags().StringP("remote", "r", "", "Clone from remote URL instead of creating empty repository")
+				printf(cmd, "🎯 \033[1mInitialized lnk repository\033[0m\n")
-	rootCmd.AddCommand(initCmd)
+				printf(cmd, "   📦 Cloned from: \033[36m%s\033[0m\n", remote)
+				printf(cmd, "   📁 Location: \033[90m~/.config/lnk\033[0m\n")
+
+				// Try to run bootstrap script if not disabled
+				if !noBootstrap {
+					printf(cmd, "\n🔍 \033[1mLooking for bootstrap script...\033[0m\n")
+
+					scriptPath, err := lnk.FindBootstrapScript()
+					if err != nil {
+						return err
+					}
+
+					if scriptPath != "" {
+						printf(cmd, "   ✅ Found bootstrap script: \033[36m%s\033[0m\n", scriptPath)
+						printf(cmd, "\n🚀 \033[1mRunning bootstrap script...\033[0m\n")
+						printf(cmd, "\n")
+
+						if err := lnk.RunBootstrapScript(scriptPath); err != nil {
+							printf(cmd, "\n⚠️  \033[33mBootstrap script failed, but repository was initialized successfully\033[0m\n")
+							printf(cmd, "   💡 You can run it manually with: \033[1mlnk bootstrap\033[0m\n")
+							printf(cmd, "   🔧 Error: %v\n", err)
+						} else {
+							printf(cmd, "\n✅ \033[1;32mBootstrap completed successfully!\033[0m\n")
+						}
+					} else {
+						printf(cmd, "   💡 No bootstrap script found\n")
+					}
+				}
+
+				printf(cmd, "\n💡 \033[33mNext steps:\033[0m\n")
+				printf(cmd, "   • Run \033[1mlnk pull\033[0m to restore symlinks\n")
+				printf(cmd, "   • Use \033[1mlnk add <file>\033[0m to manage new files\n")
+			} else {
+				printf(cmd, "🎯 \033[1mInitialized empty lnk repository\033[0m\n")
+				printf(cmd, "   📁 Location: \033[90m~/.config/lnk\033[0m\n")
+				printf(cmd, "\n💡 \033[33mNext steps:\033[0m\n")
+				printf(cmd, "   • Run \033[1mlnk add <file>\033[0m to start managing dotfiles\n")
+				printf(cmd, "   • Add a remote with: \033[1mgit remote add origin <url>\033[0m\n")
+			}
+
+			return nil
+		},
+	}
+
+	cmd.Flags().StringP("remote", "r", "", "Clone from remote URL instead of creating empty repository")
+	cmd.Flags().Bool("no-bootstrap", false, "Skip automatic execution of bootstrap script after cloning")
+	cmd.Flags().Bool("force", false, "Force initialization even if directory contains managed files (WARNING: This will overwrite existing content)")
+	return cmd
 }

cmd/list.go

@@ -0,0 +1,193 @@
+package cmd
+
+import (
+	"os"
+	"path/filepath"
+	"strings"
+
+	"github.com/spf13/cobra"
+	"github.com/yarlson/lnk/internal/core"
+)
+
+func newListCmd() *cobra.Command {
+	cmd := &cobra.Command{
+		Use:           "list",
+		Short:         "📋 List files managed by lnk",
+		Long:          "Display all files and directories currently managed by lnk.",
+		SilenceUsage:  true,
+		SilenceErrors: true,
+		RunE: func(cmd *cobra.Command, args []string) error {
+			host, _ := cmd.Flags().GetString("host")
+			all, _ := cmd.Flags().GetBool("all")
+
+			if host != "" {
+				// Show specific host configuration
+				return listHostConfig(cmd, host)
+			}
+
+			if all {
+				// Show all configurations (common + all hosts)
+				return listAllConfigs(cmd)
+			}
+
+			// Default: show common configuration
+			return listCommonConfig(cmd)
+		},
+	}
+
+	cmd.Flags().StringP("host", "H", "", "List files for specific host")
+	cmd.Flags().BoolP("all", "a", false, "List files for all hosts and common configuration")
+	return cmd
+}
+
+func listCommonConfig(cmd *cobra.Command) error {
+	lnk := core.NewLnk()
+	managedItems, err := lnk.List()
+	if err != nil {
+		return err
+	}
+
+	if len(managedItems) == 0 {
+		printf(cmd, "📋 \033[1mNo files currently managed by lnk (common)\033[0m\n")
+		printf(cmd, "   💡 Use \033[1mlnk add <file>\033[0m to start managing files\n")
+		return nil
+	}
+
+	printf(cmd, "📋 \033[1mFiles managed by lnk (common)\033[0m (\033[36m%d item", len(managedItems))
+	if len(managedItems) > 1 {
+		printf(cmd, "s")
+	}
+	printf(cmd, "\033[0m):\n\n")
+
+	for _, item := range managedItems {
+		printf(cmd, "   🔗 \033[36m%s\033[0m\n", item)
+	}
+
+	printf(cmd, "\n💡 Use \033[1mlnk status\033[0m to check sync status\n")
+	return nil
+}
+
+func listHostConfig(cmd *cobra.Command, host string) error {
+	lnk := core.NewLnk(core.WithHost(host))
+	managedItems, err := lnk.List()
+	if err != nil {
+		return err
+	}
+
+	if len(managedItems) == 0 {
+		printf(cmd, "📋 \033[1mNo files currently managed by lnk (host: %s)\033[0m\n", host)
+		printf(cmd, "   💡 Use \033[1mlnk add --host %s <file>\033[0m to start managing files\n", host)
+		return nil
+	}
+
+	printf(cmd, "📋 \033[1mFiles managed by lnk (host: %s)\033[0m (\033[36m%d item", host, len(managedItems))
+	if len(managedItems) > 1 {
+		printf(cmd, "s")
+	}
+	printf(cmd, "\033[0m):\n\n")
+
+	for _, item := range managedItems {
+		printf(cmd, "   🔗 \033[36m%s\033[0m\n", item)
+	}
+
+	printf(cmd, "\n💡 Use \033[1mlnk status\033[0m to check sync status\n")
+	return nil
+}
+
+func listAllConfigs(cmd *cobra.Command) error {
+	// List common configuration
+	printf(cmd, "📋 \033[1mAll configurations managed by lnk\033[0m\n\n")
+
+	lnk := core.NewLnk()
+	commonItems, err := lnk.List()
+	if err != nil {
+		return err
+	}
+
+	printf(cmd, "🌐 \033[1mCommon configuration\033[0m (\033[36m%d item", len(commonItems))
+	if len(commonItems) > 1 {
+		printf(cmd, "s")
+	}
+	printf(cmd, "\033[0m):\n")
+
+	if len(commonItems) == 0 {
+		printf(cmd, "   \033[90m(no files)\033[0m\n")
+	} else {
+		for _, item := range commonItems {
+			printf(cmd, "   🔗 \033[36m%s\033[0m\n", item)
+		}
+	}
+
+	// Find all host-specific configurations
+	hosts, err := findHostConfigs()
+	if err != nil {
+		return err
+	}
+
+	for _, host := range hosts {
+		printf(cmd, "\n🖥️  \033[1mHost: %s\033[0m", host)
+
+		hostLnk := core.NewLnk(core.WithHost(host))
+		hostItems, err := hostLnk.List()
+		if err != nil {
+			printf(cmd, " \033[31m(error: %v)\033[0m\n", err)
+			continue
+		}
+
+		printf(cmd, " (\033[36m%d item", len(hostItems))
+		if len(hostItems) > 1 {
+			printf(cmd, "s")
+		}
+		printf(cmd, "\033[0m):\n")
+
+		if len(hostItems) == 0 {
+			printf(cmd, "   \033[90m(no files)\033[0m\n")
+		} else {
+			for _, item := range hostItems {
+				printf(cmd, "   🔗 \033[36m%s\033[0m\n", item)
+			}
+		}
+	}
+
+	printf(cmd, "\n💡 Use \033[1mlnk list --host <hostname>\033[0m to see specific host configuration\n")
+	return nil
+}
+
+func findHostConfigs() ([]string, error) {
+	repoPath := getRepoPath()
+
+	// Check if repo exists
+	if _, err := os.Stat(repoPath); os.IsNotExist(err) {
+		return []string{}, nil
+	}
+
+	entries, err := os.ReadDir(repoPath)
+	if err != nil {
+		return nil, err
+	}
+
+	var hosts []string
+	for _, entry := range entries {
+		name := entry.Name()
+		// Look for .lnk.<hostname> files
+		if strings.HasPrefix(name, ".lnk.") && name != ".lnk" {
+			host := strings.TrimPrefix(name, ".lnk.")
+			hosts = append(hosts, host)
+		}
+	}
+
+	return hosts, nil
+}
+
+func getRepoPath() string {
+	xdgConfig := os.Getenv("XDG_CONFIG_HOME")
+	if xdgConfig == "" {
+		homeDir, err := os.UserHomeDir()
+		if err != nil {
+			xdgConfig = "."
+		} else {
+			xdgConfig = filepath.Join(homeDir, ".config")
+		}
+	}
+	return filepath.Join(xdgConfig, "lnk")
+}

cmd/pull.go

@@ -1,45 +1,56 @@
 package cmd
 
 import (
-	"fmt"
-
 	"github.com/spf13/cobra"
 	"github.com/yarlson/lnk/internal/core"
 )
 
-var pullCmd = &cobra.Command{
+func newPullCmd() *cobra.Command {
-	Use:          "pull",
+	cmd := &cobra.Command{
-	Short:        "⬇️ Pull changes from remote and restore symlinks",
+		Use:           "pull",
-	Long:         "Fetches changes from remote repository and automatically restores symlinks for all managed files.",
+		Short:         "⬇️ Pull changes from remote and restore symlinks",
-	SilenceUsage: true,
+		Long:          "Fetches changes from remote repository and automatically restores symlinks for all managed files.",
-	RunE: func(cmd *cobra.Command, args []string) error {
+		SilenceUsage:  true,
-		lnk := core.NewLnk()
+		SilenceErrors: true,
-		restored, err := lnk.Pull()
+		RunE: func(cmd *cobra.Command, args []string) error {
-		if err != nil {
+			host, _ := cmd.Flags().GetString("host")
-			return fmt.Errorf("failed to pull changes: %w", err)
-		}
 
-		if len(restored) > 0 {
+			lnk := core.NewLnk(core.WithHost(host))
-			fmt.Printf("⬇️  \033[1;32mSuccessfully pulled changes\033[0m\n")
+
-			fmt.Printf("   🔗 Restored \033[1m%d symlink", len(restored))
+			restored, err := lnk.Pull()
-			if len(restored) > 1 {
+			if err != nil {
-				fmt.Printf("s")
+				return err
 			}
-			fmt.Printf("\033[0m:\n")
+
-			for _, file := range restored {
+			if len(restored) > 0 {
-				fmt.Printf("      ✨ \033[36m%s\033[0m\n", file)
+				if host != "" {
+					printf(cmd, "⬇️  \033[1;32mSuccessfully pulled changes (host: %s)\033[0m\n", host)
+				} else {
+					printf(cmd, "⬇️  \033[1;32mSuccessfully pulled changes\033[0m\n")
+				}
+				printf(cmd, "   🔗 Restored \033[1m%d symlink", len(restored))
+				if len(restored) > 1 {
+					printf(cmd, "s")
+				}
+				printf(cmd, "\033[0m:\n")
+				for _, file := range restored {
+					printf(cmd, "      ✨ \033[36m%s\033[0m\n", file)
+				}
+				printf(cmd, "\n   🎉 Your dotfiles are synced and ready!\n")
+			} else {
+				if host != "" {
+					printf(cmd, "⬇️  \033[1;32mSuccessfully pulled changes (host: %s)\033[0m\n", host)
+				} else {
+					printf(cmd, "⬇️  \033[1;32mSuccessfully pulled changes\033[0m\n")
+				}
+				printf(cmd, "   ✅ All symlinks already in place\n")
+				printf(cmd, "   🎉 Everything is up to date!\n")
 			}
-			fmt.Printf("\n   🎉 Your dotfiles are synced and ready!\n")
-		} else {
-			fmt.Printf("⬇️  \033[1;32mSuccessfully pulled changes\033[0m\n")
-			fmt.Printf("   ✅ All symlinks already in place\n")
-			fmt.Printf("   🎉 Everything is up to date!\n")
-		}
 
-		return nil
+			return nil
-	},
+		},
-}
+	}
 
-func init() {
+	cmd.Flags().StringP("host", "H", "", "Pull and restore symlinks for specific host (default: common configuration)")
-	rootCmd.AddCommand(pullCmd)
+	return cmd
 }

cmd/push.go

@@ -1,37 +1,34 @@
 package cmd
 
 import (
-	"fmt"
-
 	"github.com/spf13/cobra"
 	"github.com/yarlson/lnk/internal/core"
 )
 
-var pushCmd = &cobra.Command{
+func newPushCmd() *cobra.Command {
-	Use:          "push [message]",
+	return &cobra.Command{
-	Short:        "🚀 Push local changes to remote repository",
+		Use:           "push [message]",
-	Long:         "Stages all changes, creates a sync commit with the provided message, and pushes to remote.",
+		Short:         "🚀 Push local changes to remote repository",
-	Args:         cobra.MaximumNArgs(1),
+		Long:          "Stages all changes, creates a sync commit with the provided message, and pushes to remote.",
-	SilenceUsage: true,
+		Args:          cobra.MaximumNArgs(1),
-	RunE: func(cmd *cobra.Command, args []string) error {
+		SilenceUsage:  true,
-		message := "lnk: sync configuration files"
+		SilenceErrors: true,
-		if len(args) > 0 {
+		RunE: func(cmd *cobra.Command, args []string) error {
-			message = args[0]
+			message := "lnk: sync configuration files"
-		}
+			if len(args) > 0 {
+				message = args[0]
+			}
 
-		lnk := core.NewLnk()
+			lnk := core.NewLnk()
-		if err := lnk.Push(message); err != nil {
+			if err := lnk.Push(message); err != nil {
-			return fmt.Errorf("failed to push changes: %w", err)
+				return err
-		}
+			}
 
-		fmt.Printf("🚀 \033[1;32mSuccessfully pushed changes\033[0m\n")
+			printf(cmd, "🚀 \033[1;32mSuccessfully pushed changes\033[0m\n")
-		fmt.Printf("   💾 Commit: \033[90m%s\033[0m\n", message)
+			printf(cmd, "   💾 Commit: \033[90m%s\033[0m\n", message)
-		fmt.Printf("   📡 Synced to remote\n")
+			printf(cmd, "   📡 Synced to remote\n")
-		fmt.Printf("   ✨ Your dotfiles are up to date!\n")
+			printf(cmd, "   ✨ Your dotfiles are up to date!\n")
-		return nil
+			return nil
-	},
+		},
-}
+	}
-
-func init() {
-	rootCmd.AddCommand(pushCmd)
 }

cmd/rm.go

@@ -1,35 +1,43 @@
 package cmd
 
 import (
-	"fmt"
 	"path/filepath"
 
 	"github.com/spf13/cobra"
 	"github.com/yarlson/lnk/internal/core"
 )
 
-var rmCmd = &cobra.Command{
+func newRemoveCmd() *cobra.Command {
-	Use:          "rm <file>",
+	cmd := &cobra.Command{
-	Short:        "🗑️ Remove a file from lnk management",
+		Use:           "rm <file>",
-	Long:         "Removes a symlink and restores the original file from the lnk repository.",
+		Short:         "🗑️ Remove a file from lnk management",
-	Args:         cobra.ExactArgs(1),
+		Long:          "Removes a symlink and restores the original file from the lnk repository.",
-	SilenceUsage: true,
+		Args:          cobra.ExactArgs(1),
-	RunE: func(cmd *cobra.Command, args []string) error {
+		SilenceUsage:  true,
-		filePath := args[0]
+		SilenceErrors: true,
+		RunE: func(cmd *cobra.Command, args []string) error {
+			filePath := args[0]
+			host, _ := cmd.Flags().GetString("host")
 
-		lnk := core.NewLnk()
+			lnk := core.NewLnk(core.WithHost(host))
-		if err := lnk.Remove(filePath); err != nil {
-			return fmt.Errorf("failed to remove file: %w", err)
-		}
 
-		basename := filepath.Base(filePath)
+			if err := lnk.Remove(filePath); err != nil {
-		fmt.Printf("🗑️  \033[1mRemoved %s from lnk\033[0m\n", basename)
+				return err
-		fmt.Printf("   ↩️  \033[90m~/.config/lnk/%s\033[0m → \033[36m%s\033[0m\n", basename, filePath)
+			}
-		fmt.Printf("   📄 Original file restored\n")
+
-		return nil
+			basename := filepath.Base(filePath)
-	},
+			if host != "" {
-}
+				printf(cmd, "🗑️  \033[1mRemoved %s from lnk (host: %s)\033[0m\n", basename, host)
-
+				printf(cmd, "   ↩️  \033[90m~/.config/lnk/%s.lnk/%s\033[0m → \033[36m%s\033[0m\n", host, basename, filePath)
-func init() {
+			} else {
-	rootCmd.AddCommand(rmCmd)
+				printf(cmd, "🗑️  \033[1mRemoved %s from lnk\033[0m\n", basename)
+				printf(cmd, "   ↩️  \033[90m~/.config/lnk/%s\033[0m → \033[36m%s\033[0m\n", basename, filePath)
+			}
+			printf(cmd, "   📄 Original file restored\n")
+			return nil
+		},
+	}
+
+	cmd.Flags().StringP("host", "H", "", "Remove file from specific host configuration (default: common configuration)")
+	return cmd
 }

cmd/root.go

@@ -12,35 +12,61 @@ var (
 	buildTime = "unknown"
 )
 
-var rootCmd = &cobra.Command{
+// NewRootCommand creates a new root command (testable)
-	Use:   "lnk",
+func NewRootCommand() *cobra.Command {
-	Short: "🔗 Dotfiles, linked. No fluff.",
+	rootCmd := &cobra.Command{
-	Long: `🔗 Lnk - Git-native dotfiles management that doesn't suck.
+		Use:   "lnk",
+		Short: "🔗 Dotfiles, linked. No fluff.",
+		Long: `🔗 Lnk - Git-native dotfiles management that doesn't suck.
 
 Move your dotfiles to ~/.config/lnk, symlink them back, and use Git like normal.
-That's it.
+Supports both common configurations, host-specific setups, and bulk operations for multiple files.
 
 ✨ Examples:
-  lnk init                    # Fresh start
+  lnk init                           # Fresh start
-  lnk init -r <repo-url>      # Clone existing dotfiles
+  lnk init -r <repo-url>             # Clone existing dotfiles (runs bootstrap automatically)
-  lnk add ~/.vimrc ~/.bashrc  # Start managing files
+  lnk add ~/.vimrc ~/.bashrc         # Start managing common files
-  lnk push "setup complete"   # Sync to remote
+  lnk add --recursive ~/.config/nvim # Add directory contents individually
-  lnk pull                    # Get latest changes
+  lnk add --dry-run ~/.gitconfig     # Preview changes without applying
+  lnk add --host work ~/.ssh/config  # Manage host-specific files
+  lnk list --all                     # Show all configurations
+  lnk pull --host work               # Pull host-specific changes
+  lnk push "setup complete"          # Sync to remote
+  lnk bootstrap                      # Run bootstrap script manually
 
-🎯 Simple, fast, and Git-native.`,
+🚀 Bootstrap Support:
-	SilenceUsage: true,
+  Automatically runs bootstrap.sh when cloning a repository.
+  Use --no-bootstrap to disable.
+
+🎯 Simple, fast, Git-native, and multi-host ready.`,
+		SilenceUsage:  true,
+		SilenceErrors: true,
+		Version:       fmt.Sprintf("%s (built %s)", version, buildTime),
+	}
+
+	// Add subcommands
+	rootCmd.AddCommand(newInitCmd())
+	rootCmd.AddCommand(newAddCmd())
+	rootCmd.AddCommand(newRemoveCmd())
+	rootCmd.AddCommand(newListCmd())
+	rootCmd.AddCommand(newStatusCmd())
+	rootCmd.AddCommand(newPushCmd())
+	rootCmd.AddCommand(newPullCmd())
+	rootCmd.AddCommand(newBootstrapCmd())
+
+	return rootCmd
 }
 
 // SetVersion sets the version information for the CLI
 func SetVersion(v, bt string) {
 	version = v
 	buildTime = bt
-	rootCmd.Version = fmt.Sprintf("%s (built %s)", version, buildTime)
 }
 
 func Execute() {
+	rootCmd := NewRootCommand()
 	if err := rootCmd.Execute(); err != nil {
-		fmt.Fprintln(os.Stderr, err)
+		_, _ = fmt.Fprintln(os.Stderr, err)
 		os.Exit(1)
 	}
 }

cmd/status.go

@@ -1,58 +1,92 @@
 package cmd
 
 import (
-	"fmt"
-
 	"github.com/spf13/cobra"
 	"github.com/yarlson/lnk/internal/core"
 )
 
-var statusCmd = &cobra.Command{
+func newStatusCmd() *cobra.Command {
-	Use:          "status",
+	return &cobra.Command{
-	Short:        "📊 Show repository sync status",
+		Use:           "status",
-	Long:         "Display how many commits ahead/behind the local repository is relative to the remote.",
+		Short:         "📊 Show repository sync status",
-	SilenceUsage: true,
+		Long:          "Display how many commits ahead/behind the local repository is relative to the remote and check for uncommitted changes.",
-	RunE: func(cmd *cobra.Command, args []string) error {
+		SilenceUsage:  true,
-		lnk := core.NewLnk()
+		SilenceErrors: true,
-		status, err := lnk.Status()
+		RunE: func(cmd *cobra.Command, args []string) error {
-		if err != nil {
+			lnk := core.NewLnk()
-			return fmt.Errorf("failed to get status: %w", err)
+			status, err := lnk.Status()
-		}
+			if err != nil {
+				return err
+			}
 
-		if status.Ahead == 0 && status.Behind == 0 {
+			if status.Dirty {
-			fmt.Printf("✅ \033[1;32mRepository is up to date\033[0m\n")
+				displayDirtyStatus(cmd, status)
-			fmt.Printf("   📡 Synced with \033[36m%s\033[0m\n", status.Remote)
+				return nil
+			}
+
+			if status.Ahead == 0 && status.Behind == 0 {
+				displayUpToDateStatus(cmd, status)
+				return nil
+			}
+
+			displaySyncStatus(cmd, status)
+			return nil
+		},
+	}
+}
+
+func displayDirtyStatus(cmd *cobra.Command, status *core.StatusInfo) {
+	printf(cmd, "⚠️  \033[1;33mRepository has uncommitted changes\033[0m\n")
+	printf(cmd, "   📡 Remote: \033[36m%s\033[0m\n", status.Remote)
+
+	if status.Ahead == 0 && status.Behind == 0 {
+		printf(cmd, "\n💡 Run \033[1mgit add && git commit\033[0m in \033[36m~/.config/lnk\033[0m or \033[1mlnk push\033[0m to commit changes\n")
+		return
+	}
+
+	printf(cmd, "\n")
+	displayAheadBehindInfo(cmd, status, true)
+	printf(cmd, "\n💡 Run \033[1mgit add && git commit\033[0m in \033[36m~/.config/lnk\033[0m or \033[1mlnk push\033[0m to commit changes\n")
+}
+
+func displayUpToDateStatus(cmd *cobra.Command, status *core.StatusInfo) {
+	printf(cmd, "✅ \033[1;32mRepository is up to date\033[0m\n")
+	printf(cmd, "   📡 Synced with \033[36m%s\033[0m\n", status.Remote)
+}
+
+func displaySyncStatus(cmd *cobra.Command, status *core.StatusInfo) {
+	printf(cmd, "📊 \033[1mRepository Status\033[0m\n")
+	printf(cmd, "   📡 Remote: \033[36m%s\033[0m\n", status.Remote)
+	printf(cmd, "\n")
+
+	displayAheadBehindInfo(cmd, status, false)
+
+	if status.Ahead > 0 && status.Behind == 0 {
+		printf(cmd, "\n💡 Run \033[1mlnk push\033[0m to sync your changes\n")
+	} else if status.Behind > 0 {
+		printf(cmd, "\n💡 Run \033[1mlnk pull\033[0m to get latest changes\n")
+	}
+}
+
+func displayAheadBehindInfo(cmd *cobra.Command, status *core.StatusInfo, isDirty bool) {
+	if status.Ahead > 0 {
+		commitText := getCommitText(status.Ahead)
+		if isDirty {
+			printf(cmd, "   ⬆️ \033[1;33m%d %s ahead\033[0m (excluding uncommitted changes)\n", status.Ahead, commitText)
 		} else {
-			fmt.Printf("📊 \033[1mRepository Status\033[0m\n")
+			printf(cmd, "   ⬆️ \033[1;33m%d %s ahead\033[0m - ready to push\n", status.Ahead, commitText)
-			fmt.Printf("   📡 Remote: \033[36m%s\033[0m\n", status.Remote)
-			fmt.Printf("\n")
-
-			if status.Ahead > 0 {
-				commitText := "commit"
-				if status.Ahead > 1 {
-					commitText = "commits"
-				}
-				fmt.Printf("   ⬆️  \033[1;33m%d %s ahead\033[0m - ready to push\n", status.Ahead, commitText)
-			}
-			if status.Behind > 0 {
-				commitText := "commit"
-				if status.Behind > 1 {
-					commitText = "commits"
-				}
-				fmt.Printf("   ⬇️  \033[1;31m%d %s behind\033[0m - run \033[1mlnk pull\033[0m\n", status.Behind, commitText)
-			}
-
-			if status.Ahead > 0 && status.Behind == 0 {
-				fmt.Printf("\n💡 Run \033[1mlnk push\033[0m to sync your changes")
-			} else if status.Behind > 0 {
-				fmt.Printf("\n💡 Run \033[1mlnk pull\033[0m to get latest changes")
-			}
 		}
+	}
 
-		return nil
+	if status.Behind > 0 {
-	},
+		commitText := getCommitText(status.Behind)
+		printf(cmd, "   ⬇️ \033[1;31m%d %s behind\033[0m - run \033[1mlnk pull\033[0m\n", status.Behind, commitText)
+	}
 }
 
-func init() {
+func getCommitText(count int) string {
-	rootCmd.AddCommand(statusCmd)
+	if count == 1 {
+		return "commit"
+	}
+	return "commits"
 }

cmd/utils.go

@@ -0,0 +1,12 @@
+package cmd
+
+import (
+	"fmt"
+
+	"github.com/spf13/cobra"
+)
+
+// printf is a helper function to simplify output formatting in commands
+func printf(cmd *cobra.Command, format string, args ...interface{}) {
+	_, _ = fmt.Fprintf(cmd.OutOrStdout(), format, args...)
+}

install.sh

@@ -18,7 +18,7 @@ INSTALL_DIR="/usr/local/bin"
 BINARY_NAME="lnk"
 
 # Fallback version if redirect fails
-FALLBACK_VERSION="v0.0.2"
+FALLBACK_VERSION="v0.3.0"
 
 # Detect OS and architecture
 detect_platform() {

internal/fs/errors.go

@@ -0,0 +1,119 @@
+package fs
+
+import "fmt"
+
+// ANSI color codes for consistent formatting
+const (
+	colorReset = "\033[0m"
+	colorRed   = "\033[31m"
+	colorBold  = "\033[1m"
+)
+
+// formatError creates a consistently formatted error message with ❌ prefix
+func formatError(message string, args ...interface{}) string {
+	return fmt.Sprintf("❌ "+message, args...)
+}
+
+// formatPath formats a file path with red color
+func formatPath(path string) string {
+	return fmt.Sprintf("%s%s%s", colorRed, path, colorReset)
+}
+
+// formatCommand formats a command with bold styling
+func formatCommand(command string) string {
+	return fmt.Sprintf("%s%s%s", colorBold, command, colorReset)
+}
+
+// FileNotExistsError represents an error when a file does not exist
+type FileNotExistsError struct {
+	Path string
+	Err  error
+}
+
+func (e *FileNotExistsError) Error() string {
+	return formatError("File or directory not found: %s", formatPath(e.Path))
+}
+
+func (e *FileNotExistsError) Unwrap() error {
+	return e.Err
+}
+
+// FileCheckError represents an error when failing to check a file
+type FileCheckError struct {
+	Err error
+}
+
+func (e *FileCheckError) Error() string {
+	return formatError("Unable to access file. Please check file permissions and try again.")
+}
+
+func (e *FileCheckError) Unwrap() error {
+	return e.Err
+}
+
+// UnsupportedFileTypeError represents an error when a file type is not supported
+type UnsupportedFileTypeError struct {
+	Path string
+}
+
+func (e *UnsupportedFileTypeError) Error() string {
+	return formatError("Cannot manage this type of file: %s\n   💡 lnk can only manage regular files and directories", formatPath(e.Path))
+}
+
+func (e *UnsupportedFileTypeError) Unwrap() error {
+	return nil
+}
+
+// NotManagedByLnkError represents an error when a file is not managed by lnk
+type NotManagedByLnkError struct {
+	Path string
+}
+
+func (e *NotManagedByLnkError) Error() string {
+	return formatError("File is not managed by lnk: %s\n   💡 Use %s to manage this file first",
+		formatPath(e.Path), formatCommand("lnk add"))
+}
+
+func (e *NotManagedByLnkError) Unwrap() error {
+	return nil
+}
+
+// SymlinkReadError represents an error when failing to read a symlink
+type SymlinkReadError struct {
+	Err error
+}
+
+func (e *SymlinkReadError) Error() string {
+	return formatError("Unable to read symlink. The file may be corrupted or have invalid permissions.")
+}
+
+func (e *SymlinkReadError) Unwrap() error {
+	return e.Err
+}
+
+// DirectoryCreationError represents an error when failing to create a directory
+type DirectoryCreationError struct {
+	Operation string
+	Err       error
+}
+
+func (e *DirectoryCreationError) Error() string {
+	return formatError("Failed to create directory. Please check permissions and available disk space.")
+}
+
+func (e *DirectoryCreationError) Unwrap() error {
+	return e.Err
+}
+
+// RelativePathCalculationError represents an error when failing to calculate relative path
+type RelativePathCalculationError struct {
+	Err error
+}
+
+func (e *RelativePathCalculationError) Error() string {
+	return formatError("Unable to create symlink due to path configuration issues. Please check file locations.")
+}
+
+func (e *RelativePathCalculationError) Unwrap() error {
+	return e.Err
+}

internal/fs/filesystem.go

@@ -1,7 +1,6 @@
 package fs
 
 import (
-	"fmt"
 	"os"
 	"path/filepath"
 	"strings"
@@ -17,18 +16,19 @@ func New() *FileSystem {
 
 // ValidateFileForAdd validates that a file or directory can be added to lnk
 func (fs *FileSystem) ValidateFileForAdd(filePath string) error {
-	// Check if file exists
+	// Check if file exists and get its info
 	info, err := os.Stat(filePath)
 	if err != nil {
 		if os.IsNotExist(err) {
-			return fmt.Errorf("❌ File does not exist: \033[31m%s\033[0m", filePath)
+			return &FileNotExistsError{Path: filePath, Err: err}
 		}
-		return fmt.Errorf("❌ Failed to check file: %w", err)
+
+		return &FileCheckError{Err: err}
 	}
 
 	// Allow both regular files and directories
 	if !info.Mode().IsRegular() && !info.IsDir() {
-		return fmt.Errorf("❌ Only regular files and directories are supported: \033[31m%s\033[0m", filePath)
+		return &UnsupportedFileTypeError{Path: filePath}
 	}
 
 	return nil
@@ -36,98 +36,79 @@ func (fs *FileSystem) ValidateFileForAdd(filePath string) error {
 
 // ValidateSymlinkForRemove validates that a symlink can be removed from lnk
 func (fs *FileSystem) ValidateSymlinkForRemove(filePath, repoPath string) error {
-	// Check if file exists
+	// Check if file exists and is a symlink
 	info, err := os.Lstat(filePath) // Use Lstat to not follow symlinks
 	if err != nil {
 		if os.IsNotExist(err) {
-			return fmt.Errorf("❌ File does not exist: \033[31m%s\033[0m", filePath)
+			return &FileNotExistsError{Path: filePath, Err: err}
 		}
-		return fmt.Errorf("❌ Failed to check file: %w", err)
+
+		return &FileCheckError{Err: err}
 	}
 
-	// Check if it's a symlink
 	if info.Mode()&os.ModeSymlink == 0 {
-		return fmt.Errorf("❌ File is not managed by lnk: \033[31m%s\033[0m\n   💡 Use \033[1mlnk add\033[0m to manage this file first", filePath)
+		return &NotManagedByLnkError{Path: filePath}
 	}
 
-	// Check if symlink points to the repository
+	// Get symlink target and resolve to absolute path
 	target, err := os.Readlink(filePath)
 	if err != nil {
-		return fmt.Errorf("failed to read symlink: %w", err)
+		return &SymlinkReadError{Err: err}
 	}
 
-	// Convert relative path to absolute if needed
 	if !filepath.IsAbs(target) {
 		target = filepath.Join(filepath.Dir(filePath), target)
 	}
 
-	// Clean the path to resolve any .. or . components
+	// Clean paths and check if target is inside the repository
 	target = filepath.Clean(target)
 	repoPath = filepath.Clean(repoPath)
 
-	// Check if target is inside the repository
 	if !strings.HasPrefix(target, repoPath+string(filepath.Separator)) && target != repoPath {
-		return fmt.Errorf("❌ File is not managed by lnk: \033[31m%s\033[0m", filePath)
+		return &NotManagedByLnkError{Path: filePath}
 	}
 
 	return nil
 }
 
+// Move moves a file or directory from source to destination based on the file info
+func (fs *FileSystem) Move(src, dst string, info os.FileInfo) error {
+	if info.IsDir() {
+		return fs.MoveDirectory(src, dst)
+	}
+	return fs.MoveFile(src, dst)
+}
+
 // MoveFile moves a file from source to destination
 func (fs *FileSystem) MoveFile(src, dst string) error {
 	// Ensure destination directory exists
-	dstDir := filepath.Dir(dst)
+	if err := os.MkdirAll(filepath.Dir(dst), 0755); err != nil {
-	if err := os.MkdirAll(dstDir, 0755); err != nil {
+		return &DirectoryCreationError{Operation: "destination directory", Err: err}
-		return fmt.Errorf("failed to create destination directory: %w", err)
 	}
 
 	// Move the file
-	if err := os.Rename(src, dst); err != nil {
+	return os.Rename(src, dst)
-		return fmt.Errorf("failed to move file from %s to %s: %w", src, dst, err)
-	}
-
-	return nil
 }
 
 // CreateSymlink creates a relative symlink from target to linkPath
 func (fs *FileSystem) CreateSymlink(target, linkPath string) error {
 	// Calculate relative path from linkPath to target
-	linkDir := filepath.Dir(linkPath)
+	relTarget, err := filepath.Rel(filepath.Dir(linkPath), target)
-	relTarget, err := filepath.Rel(linkDir, target)
 	if err != nil {
-		return fmt.Errorf("failed to calculate relative path: %w", err)
+		return &RelativePathCalculationError{Err: err}
 	}
 
 	// Create the symlink
-	if err := os.Symlink(relTarget, linkPath); err != nil {
+	return os.Symlink(relTarget, linkPath)
-		return fmt.Errorf("failed to create symlink: %w", err)
-	}
-
-	return nil
 }
 
 // MoveDirectory moves a directory from source to destination recursively
 func (fs *FileSystem) MoveDirectory(src, dst string) error {
-	// Check if source is a directory
-	info, err := os.Stat(src)
-	if err != nil {
-		return fmt.Errorf("failed to stat source: %w", err)
-	}
-
-	if !info.IsDir() {
-		return fmt.Errorf("source is not a directory: %s", src)
-	}
-
 	// Ensure destination parent directory exists
-	dstParent := filepath.Dir(dst)
+	if err := os.MkdirAll(filepath.Dir(dst), 0755); err != nil {
-	if err := os.MkdirAll(dstParent, 0755); err != nil {
+		return &DirectoryCreationError{Operation: "destination parent directory", Err: err}
-		return fmt.Errorf("failed to create destination parent directory: %w", err)
 	}
 
-	// Use os.Rename which works for directories
+	// Move the directory
-	if err := os.Rename(src, dst); err != nil {
+	return os.Rename(src, dst)
-		return fmt.Errorf("failed to move directory from %s to %s: %w", src, dst, err)
-	}
-
-	return nil
 }

internal/git/errors.go

@@ -0,0 +1,218 @@
+package git
+
+import "fmt"
+
+// ANSI color codes for consistent formatting
+const (
+	colorReset  = "\033[0m"
+	colorBold   = "\033[1m"
+	colorGreen  = "\033[32m"
+	colorYellow = "\033[33m"
+)
+
+// formatError creates a consistently formatted error message with ❌ prefix
+func formatError(message string, args ...interface{}) string {
+	return fmt.Sprintf("❌ "+message, args...)
+}
+
+// formatURL formats a URL with styling
+func formatURL(url string) string {
+	return fmt.Sprintf("%s%s%s", colorBold, url, colorReset)
+}
+
+// formatRemote formats a remote name with styling
+func formatRemote(remote string) string {
+	return fmt.Sprintf("%s%s%s", colorGreen, remote, colorReset)
+}
+
+// GitInitError represents an error during git initialization
+type GitInitError struct {
+	Output string
+	Err    error
+}
+
+func (e *GitInitError) Error() string {
+	return formatError("Failed to initialize git repository. Please ensure git is installed and try again.")
+}
+
+func (e *GitInitError) Unwrap() error {
+	return e.Err
+}
+
+// BranchSetupError represents an error setting up the default branch
+type BranchSetupError struct {
+	Err error
+}
+
+func (e *BranchSetupError) Error() string {
+	return formatError("Failed to set up the default branch. Please check your git installation.")
+}
+
+func (e *BranchSetupError) Unwrap() error {
+	return e.Err
+}
+
+// RemoteExistsError represents an error when a remote already exists with different URL
+type RemoteExistsError struct {
+	Remote      string
+	ExistingURL string
+	NewURL      string
+}
+
+func (e *RemoteExistsError) Error() string {
+	return formatError("Remote %s is already configured with a different repository (%s). Cannot add %s.",
+		formatRemote(e.Remote), formatURL(e.ExistingURL), formatURL(e.NewURL))
+}
+
+func (e *RemoteExistsError) Unwrap() error {
+	return nil
+}
+
+// GitCommandError represents a generic git command execution error
+type GitCommandError struct {
+	Command string
+	Output  string
+	Err     error
+}
+
+func (e *GitCommandError) Error() string {
+	// Provide user-friendly messages based on common command types
+	switch e.Command {
+	case "add":
+		return formatError("Failed to stage files for commit. Please check file permissions and try again.")
+	case "commit":
+		return formatError("Failed to create commit. Please ensure you have staged changes and try again.")
+	case "remote add":
+		return formatError("Failed to add remote repository. Please check the repository URL and try again.")
+	case "rm":
+		return formatError("Failed to remove file from git tracking. Please check if the file exists and try again.")
+	case "log":
+		return formatError("Failed to retrieve commit history.")
+	case "remote":
+		return formatError("Failed to retrieve remote repository information.")
+	case "clone":
+		return formatError("Failed to clone repository. Please check the repository URL and your network connection.")
+	default:
+		return formatError("Git operation failed. Please check your repository state and try again.")
+	}
+}
+
+func (e *GitCommandError) Unwrap() error {
+	return e.Err
+}
+
+// NoRemoteError represents an error when no remote is configured
+type NoRemoteError struct{}
+
+func (e *NoRemoteError) Error() string {
+	return formatError("No remote repository is configured. Please add a remote repository first.")
+}
+
+func (e *NoRemoteError) Unwrap() error {
+	return nil
+}
+
+// RemoteNotFoundError represents an error when a specific remote is not found
+type RemoteNotFoundError struct {
+	Remote string
+	Err    error
+}
+
+func (e *RemoteNotFoundError) Error() string {
+	return formatError("Remote repository %s is not configured.", formatRemote(e.Remote))
+}
+
+func (e *RemoteNotFoundError) Unwrap() error {
+	return e.Err
+}
+
+// GitConfigError represents an error with git configuration
+type GitConfigError struct {
+	Setting string
+	Err     error
+}
+
+func (e *GitConfigError) Error() string {
+	return formatError("Failed to configure git settings. Please check your git installation.")
+}
+
+func (e *GitConfigError) Unwrap() error {
+	return e.Err
+}
+
+// UncommittedChangesError represents an error checking for uncommitted changes
+type UncommittedChangesError struct {
+	Err error
+}
+
+func (e *UncommittedChangesError) Error() string {
+	return formatError("Failed to check repository status. Please verify your git repository is valid.")
+}
+
+func (e *UncommittedChangesError) Unwrap() error {
+	return e.Err
+}
+
+// DirectoryRemovalError represents an error removing a directory
+type DirectoryRemovalError struct {
+	Path string
+	Err  error
+}
+
+func (e *DirectoryRemovalError) Error() string {
+	return formatError("Failed to prepare directory for operation. Please check directory permissions.")
+}
+
+func (e *DirectoryRemovalError) Unwrap() error {
+	return e.Err
+}
+
+// DirectoryCreationError represents an error creating a directory
+type DirectoryCreationError struct {
+	Path string
+	Err  error
+}
+
+func (e *DirectoryCreationError) Error() string {
+	return formatError("Failed to create directory. Please check permissions and available disk space.")
+}
+
+func (e *DirectoryCreationError) Unwrap() error {
+	return e.Err
+}
+
+// PushError represents an error during git push operation
+type PushError struct {
+	Reason string
+	Output string
+	Err    error
+}
+
+func (e *PushError) Error() string {
+	if e.Reason != "" {
+		return formatError("Cannot push changes: %s", e.Reason)
+	}
+	return formatError("Failed to push changes to remote repository. Please check your network connection and repository permissions.")
+}
+
+func (e *PushError) Unwrap() error {
+	return e.Err
+}
+
+// PullError represents an error during git pull operation
+type PullError struct {
+	Reason string
+	Output string
+	Err    error
+}
+
+func (e *PullError) Error() string {
+	if e.Reason != "" {
+		return formatError("Cannot pull changes: %s", e.Reason)
+	}
+	return formatError("Failed to pull changes from remote repository. Please check your network connection and resolve any conflicts.")
+}
+
+func (e *PullError) Unwrap() error {
+	return e.Err
+}

internal/git/git.go

@@ -34,7 +34,7 @@ func (g *Git) Init() error {
 
 		output, err := cmd.CombinedOutput()
 		if err != nil {
-			return fmt.Errorf("git init failed: %w\nOutput: %s", err, string(output))
+			return &GitInitError{Output: string(output), Err: err}
 		}
 
 		// Set the default branch to main
@@ -42,7 +42,7 @@ func (g *Git) Init() error {
 		cmd.Dir = g.repoPath
 
 		if err := cmd.Run(); err != nil {
-			return fmt.Errorf("failed to set default branch to main: %w", err)
+			return &BranchSetupError{Err: err}
 		}
 	}
 
@@ -60,7 +60,7 @@ func (g *Git) AddRemote(name, url string) error {
 			return nil
 		}
 		// Different URL, error
-		return fmt.Errorf("remote %s already exists with different URL: %s (trying to add: %s)", name, existingURL, url)
+		return &RemoteExistsError{Remote: name, ExistingURL: existingURL, NewURL: url}
 	}
 
 	// Remote doesn't exist, add it
@@ -69,7 +69,7 @@ func (g *Git) AddRemote(name, url string) error {
 
 	output, err := cmd.CombinedOutput()
 	if err != nil {
-		return fmt.Errorf("git remote add failed: %w\nOutput: %s", err, string(output))
+		return &GitCommandError{Command: "remote add", Output: string(output), Err: err}
 	}
 
 	return nil
@@ -164,7 +164,7 @@ func (g *Git) Add(filename string) error {
 
 	output, err := cmd.CombinedOutput()
 	if err != nil {
-		return fmt.Errorf("git add failed: %w\nOutput: %s", err, string(output))
+		return &GitCommandError{Command: "add", Output: string(output), Err: err}
 	}
 
 	return nil
@@ -189,7 +189,7 @@ func (g *Git) Remove(filename string) error {
 
 	output, err := cmd.CombinedOutput()
 	if err != nil {
-		return fmt.Errorf("git rm failed: %w\nOutput: %s", err, string(output))
+		return &GitCommandError{Command: "rm", Output: string(output), Err: err}
 	}
 
 	return nil
@@ -207,7 +207,7 @@ func (g *Git) Commit(message string) error {
 
 	output, err := cmd.CombinedOutput()
 	if err != nil {
-		return fmt.Errorf("git commit failed: %w\nOutput: %s", err, string(output))
+		return &GitCommandError{Command: "commit", Output: string(output), Err: err}
 	}
 
 	return nil
@@ -223,7 +223,7 @@ func (g *Git) ensureGitConfig() error {
 		cmd = exec.Command("git", "config", "user.name", "Lnk User")
 		cmd.Dir = g.repoPath
 		if err := cmd.Run(); err != nil {
-			return fmt.Errorf("failed to set git user.name: %w", err)
+			return &GitConfigError{Setting: "user.name", Err: err}
 		}
 	}
 
@@ -235,7 +235,7 @@ func (g *Git) ensureGitConfig() error {
 		cmd = exec.Command("git", "config", "user.email", "lnk@localhost")
 		cmd.Dir = g.repoPath
 		if err := cmd.Run(); err != nil {
-			return fmt.Errorf("failed to set git user.email: %w", err)
+			return &GitConfigError{Setting: "user.email", Err: err}
 		}
 	}
 
@@ -260,7 +260,7 @@ func (g *Git) GetCommits() ([]string, error) {
 		if strings.Contains(outputStr, "does not have any commits yet") {
 			return []string{}, nil
 		}
-		return nil, fmt.Errorf("git log failed: %w", err)
+		return nil, &GitCommandError{Command: "log", Output: outputStr, Err: err}
 	}
 
 	commits := strings.Split(strings.TrimSpace(string(output)), "\n")
@@ -282,18 +282,18 @@ func (g *Git) GetRemoteInfo() (string, error) {
 
 		output, err := cmd.Output()
 		if err != nil {
-			return "", fmt.Errorf("failed to list remotes: %w", err)
+			return "", &GitCommandError{Command: "remote", Output: string(output), Err: err}
 		}
 
 		remotes := strings.Split(strings.TrimSpace(string(output)), "\n")
 		if len(remotes) == 0 || remotes[0] == "" {
-			return "", fmt.Errorf("no remote configured")
+			return "", &NoRemoteError{}
 		}
 
 		// Use the first remote
 		url, err = g.getRemoteURL(remotes[0])
 		if err != nil {
-			return "", fmt.Errorf("failed to get remote URL: %w", err)
+			return "", &RemoteNotFoundError{Remote: remotes[0], Err: err}
 		}
 	}
 
@@ -305,6 +305,7 @@ type StatusInfo struct {
 	Ahead  int
 	Behind int
 	Remote string
+	Dirty  bool
 }
 
 // GetStatus returns the repository status relative to remote
@@ -315,6 +316,12 @@ func (g *Git) GetStatus() (*StatusInfo, error) {
 		return nil, err
 	}
 
+	// Check for uncommitted changes
+	dirty, err := g.HasChanges()
+	if err != nil {
+		return nil, &UncommittedChangesError{Err: err}
+	}
+
 	// Get the remote tracking branch
 	cmd := exec.Command("git", "rev-parse", "--abbrev-ref", "--symbolic-full-name", "@{u}")
 	cmd.Dir = g.repoPath
@@ -327,6 +334,7 @@ func (g *Git) GetStatus() (*StatusInfo, error) {
 			Ahead:  g.getAheadCount(remoteBranch),
 			Behind: 0, // Can't be behind if no upstream
 			Remote: remoteBranch,
+			Dirty:  dirty,
 		}, nil
 	}
 
@@ -336,6 +344,7 @@ func (g *Git) GetStatus() (*StatusInfo, error) {
 		Ahead:  g.getAheadCount(remoteBranch),
 		Behind: g.getBehindCount(remoteBranch),
 		Remote: remoteBranch,
+		Dirty:  dirty,
 	}, nil
 }
 
@@ -401,7 +410,7 @@ func (g *Git) HasChanges() (bool, error) {
 
 	output, err := cmd.Output()
 	if err != nil {
-		return false, fmt.Errorf("git status failed: %w", err)
+		return false, &GitCommandError{Command: "status", Output: string(output), Err: err}
 	}
 
 	return len(strings.TrimSpace(string(output))) > 0, nil
@@ -414,7 +423,7 @@ func (g *Git) AddAll() error {
 
 	output, err := cmd.CombinedOutput()
 	if err != nil {
-		return fmt.Errorf("git add failed: %w\nOutput: %s", err, string(output))
+		return &GitCommandError{Command: "add", Output: string(output), Err: err}
 	}
 
 	return nil
@@ -425,7 +434,7 @@ func (g *Git) Push() error {
 	// First ensure we have a remote configured
 	_, err := g.GetRemoteInfo()
 	if err != nil {
-		return fmt.Errorf("cannot push: %w", err)
+		return &PushError{Reason: err.Error(), Err: err}
 	}
 
 	cmd := exec.Command("git", "push", "-u", "origin", "main")
@@ -433,7 +442,7 @@ func (g *Git) Push() error {
 
 	output, err := cmd.CombinedOutput()
 	if err != nil {
-		return fmt.Errorf("git push failed: %w\nOutput: %s", err, string(output))
+		return &PushError{Output: string(output), Err: err}
 	}
 
 	return nil
@@ -444,7 +453,7 @@ func (g *Git) Pull() error {
 	// First ensure we have a remote configured
 	_, err := g.GetRemoteInfo()
 	if err != nil {
-		return fmt.Errorf("cannot pull: %w", err)
+		return &PullError{Reason: err.Error(), Err: err}
 	}
 
 	cmd := exec.Command("git", "pull", "origin", "main")
@@ -452,7 +461,7 @@ func (g *Git) Pull() error {
 
 	output, err := cmd.CombinedOutput()
 	if err != nil {
-		return fmt.Errorf("git pull failed: %w\nOutput: %s", err, string(output))
+		return &PullError{Output: string(output), Err: err}
 	}
 
 	return nil
@@ -462,20 +471,20 @@ func (g *Git) Pull() error {
 func (g *Git) Clone(url string) error {
 	// Remove the directory if it exists to ensure clean clone
 	if err := os.RemoveAll(g.repoPath); err != nil {
-		return fmt.Errorf("failed to remove existing directory: %w", err)
+		return &DirectoryRemovalError{Path: g.repoPath, Err: err}
 	}
 
 	// Create parent directory
 	parentDir := filepath.Dir(g.repoPath)
 	if err := os.MkdirAll(parentDir, 0755); err != nil {
-		return fmt.Errorf("failed to create parent directory: %w", err)
+		return &DirectoryCreationError{Path: parentDir, Err: err}
 	}
 
 	// Clone the repository
 	cmd := exec.Command("git", "clone", url, g.repoPath)
 	output, err := cmd.CombinedOutput()
 	if err != nil {
-		return fmt.Errorf("git clone failed: %w\nOutput: %s", err, string(output))
+		return &GitCommandError{Command: "clone", Output: string(output), Err: err}
 	}
 
 	// Set up upstream tracking for main branch

test/integration_test.go

@@ -1,718 +0,0 @@
-package test
-
-import (
-	"os"
-	"os/exec"
-	"path/filepath"
-	"strings"
-	"testing"
-
-	"github.com/stretchr/testify/suite"
-	"github.com/yarlson/lnk/internal/core"
-)
-
-type LnkIntegrationTestSuite struct {
-	suite.Suite
-	tempDir     string
-	originalDir string
-	lnk         *core.Lnk
-}
-
-func (suite *LnkIntegrationTestSuite) SetupTest() {
-	// Create temporary directory for each test
-	tempDir, err := os.MkdirTemp("", "lnk-test-*")
-	suite.Require().NoError(err)
-	suite.tempDir = tempDir
-
-	// Change to temp directory
-	originalDir, err := os.Getwd()
-	suite.Require().NoError(err)
-	suite.originalDir = originalDir
-
-	err = os.Chdir(tempDir)
-	suite.Require().NoError(err)
-
-	// Set XDG_CONFIG_HOME to temp directory
-	suite.T().Setenv("XDG_CONFIG_HOME", tempDir)
-
-	// Initialize Lnk instance
-	suite.lnk = core.NewLnk()
-}
-
-func (suite *LnkIntegrationTestSuite) TearDownTest() {
-	// Return to original directory
-	err := os.Chdir(suite.originalDir)
-	suite.Require().NoError(err)
-
-	// Clean up temp directory
-	err = os.RemoveAll(suite.tempDir)
-	suite.Require().NoError(err)
-}
-
-func (suite *LnkIntegrationTestSuite) TestInit() {
-	// Test that init creates the directory and Git repo
-	err := suite.lnk.Init()
-	suite.Require().NoError(err)
-
-	// Check that the lnk directory was created
-	lnkDir := filepath.Join(suite.tempDir, "lnk")
-	suite.DirExists(lnkDir)
-
-	// Check that Git repo was initialized
-	gitDir := filepath.Join(lnkDir, ".git")
-	suite.DirExists(gitDir)
-
-	// Verify it's a non-bare repo
-	configPath := filepath.Join(gitDir, "config")
-	suite.FileExists(configPath)
-
-	// Verify the default branch is set to 'main'
-	cmd := exec.Command("git", "symbolic-ref", "HEAD")
-	cmd.Dir = lnkDir
-	output, err := cmd.Output()
-	suite.Require().NoError(err)
-	suite.Equal("refs/heads/main", strings.TrimSpace(string(output)))
-}
-
-func (suite *LnkIntegrationTestSuite) TestAddFile() {
-	// Initialize first
-	err := suite.lnk.Init()
-	suite.Require().NoError(err)
-
-	// Create a test file
-	testFile := filepath.Join(suite.tempDir, ".bashrc")
-	content := "export PATH=$PATH:/usr/local/bin"
-	err = os.WriteFile(testFile, []byte(content), 0644)
-	suite.Require().NoError(err)
-
-	// Add the file
-	err = suite.lnk.Add(testFile)
-	suite.Require().NoError(err)
-
-	// Check that the original file is now a symlink
-	info, err := os.Lstat(testFile)
-	suite.Require().NoError(err)
-	suite.Equal(os.ModeSymlink, info.Mode()&os.ModeSymlink)
-
-	// Check that the file exists in the repo
-	repoFile := filepath.Join(suite.tempDir, "lnk", ".bashrc")
-	suite.FileExists(repoFile)
-
-	// Check that the content is preserved
-	repoContent, err := os.ReadFile(repoFile)
-	suite.Require().NoError(err)
-	suite.Equal(content, string(repoContent))
-
-	// Check that symlink points to the correct location
-	linkTarget, err := os.Readlink(testFile)
-	suite.Require().NoError(err)
-	expectedTarget, err := filepath.Rel(filepath.Dir(testFile), repoFile)
-	suite.Require().NoError(err)
-	suite.Equal(expectedTarget, linkTarget)
-
-	// Check that Git commit was made
-	commits, err := suite.lnk.GetCommits()
-	suite.Require().NoError(err)
-	suite.Len(commits, 1)
-	suite.Contains(commits[0], "lnk: added .bashrc")
-}
-
-func (suite *LnkIntegrationTestSuite) TestRemoveFile() {
-	// Initialize and add a file first
-	err := suite.lnk.Init()
-	suite.Require().NoError(err)
-
-	testFile := filepath.Join(suite.tempDir, ".vimrc")
-	content := "set number"
-	err = os.WriteFile(testFile, []byte(content), 0644)
-	suite.Require().NoError(err)
-
-	err = suite.lnk.Add(testFile)
-	suite.Require().NoError(err)
-
-	// Now remove the file
-	err = suite.lnk.Remove(testFile)
-	suite.Require().NoError(err)
-
-	// Check that the symlink is gone and regular file is restored
-	info, err := os.Lstat(testFile)
-	suite.Require().NoError(err)
-	suite.Equal(os.FileMode(0), info.Mode()&os.ModeSymlink) // Not a symlink
-
-	// Check that content is preserved
-	restoredContent, err := os.ReadFile(testFile)
-	suite.Require().NoError(err)
-	suite.Equal(content, string(restoredContent))
-
-	// Check that file is removed from repo
-	repoFile := filepath.Join(suite.tempDir, "lnk", ".vimrc")
-	suite.NoFileExists(repoFile)
-
-	// Check that Git commit was made
-	commits, err := suite.lnk.GetCommits()
-	suite.Require().NoError(err)
-	suite.Len(commits, 2) // add + remove
-	suite.Contains(commits[0], "lnk: removed .vimrc")
-	suite.Contains(commits[1], "lnk: added .vimrc")
-}
-
-func (suite *LnkIntegrationTestSuite) TestAddNonexistentFile() {
-	err := suite.lnk.Init()
-	suite.Require().NoError(err)
-
-	err = suite.lnk.Add("/nonexistent/file")
-	suite.Error(err)
-	suite.Contains(err.Error(), "File does not exist")
-}
-
-func (suite *LnkIntegrationTestSuite) TestAddDirectory() {
-	err := suite.lnk.Init()
-	suite.Require().NoError(err)
-
-	// Create a directory with files
-	testDir := filepath.Join(suite.tempDir, "testdir")
-	err = os.MkdirAll(testDir, 0755)
-	suite.Require().NoError(err)
-
-	// Add files to the directory
-	testFile1 := filepath.Join(testDir, "file1.txt")
-	err = os.WriteFile(testFile1, []byte("content1"), 0644)
-	suite.Require().NoError(err)
-
-	testFile2 := filepath.Join(testDir, "file2.txt")
-	err = os.WriteFile(testFile2, []byte("content2"), 0644)
-	suite.Require().NoError(err)
-
-	// Add the directory - should now succeed
-	err = suite.lnk.Add(testDir)
-	suite.Require().NoError(err)
-
-	// Check that the directory is now a symlink
-	info, err := os.Lstat(testDir)
-	suite.Require().NoError(err)
-	suite.Equal(os.ModeSymlink, info.Mode()&os.ModeSymlink)
-
-	// Check that the directory exists in the repo
-	repoDir := filepath.Join(suite.tempDir, "lnk", "testdir")
-	suite.DirExists(repoDir)
-
-	// Check that files are preserved
-	repoFile1 := filepath.Join(repoDir, "file1.txt")
-	repoFile2 := filepath.Join(repoDir, "file2.txt")
-	suite.FileExists(repoFile1)
-	suite.FileExists(repoFile2)
-
-	content1, err := os.ReadFile(repoFile1)
-	suite.Require().NoError(err)
-	suite.Equal("content1", string(content1))
-
-	content2, err := os.ReadFile(repoFile2)
-	suite.Require().NoError(err)
-	suite.Equal("content2", string(content2))
-
-	// Check that .lnk file was created and contains the directory
-	lnkFile := filepath.Join(suite.tempDir, "lnk", ".lnk")
-	suite.FileExists(lnkFile)
-
-	lnkContent, err := os.ReadFile(lnkFile)
-	suite.Require().NoError(err)
-	suite.Contains(string(lnkContent), "testdir")
-
-	// Check that Git commit was made
-	commits, err := suite.lnk.GetCommits()
-	suite.Require().NoError(err)
-	suite.Len(commits, 1)
-	suite.Contains(commits[0], "lnk: added testdir")
-}
-
-func (suite *LnkIntegrationTestSuite) TestRemoveDirectory() {
-	// Initialize and add a directory first
-	err := suite.lnk.Init()
-	suite.Require().NoError(err)
-
-	testDir := filepath.Join(suite.tempDir, "testdir")
-	err = os.MkdirAll(testDir, 0755)
-	suite.Require().NoError(err)
-
-	testFile := filepath.Join(testDir, "config.txt")
-	content := "test config"
-	err = os.WriteFile(testFile, []byte(content), 0644)
-	suite.Require().NoError(err)
-
-	err = suite.lnk.Add(testDir)
-	suite.Require().NoError(err)
-
-	// Now remove the directory
-	err = suite.lnk.Remove(testDir)
-	suite.Require().NoError(err)
-
-	// Check that the symlink is gone and regular directory is restored
-	info, err := os.Lstat(testDir)
-	suite.Require().NoError(err)
-	suite.Equal(os.FileMode(0), info.Mode()&os.ModeSymlink) // Not a symlink
-	suite.True(info.IsDir())                                // Is a directory
-
-	// Check that content is preserved
-	restoredContent, err := os.ReadFile(testFile)
-	suite.Require().NoError(err)
-	suite.Equal(content, string(restoredContent))
-
-	// Check that directory is removed from repo
-	repoDir := filepath.Join(suite.tempDir, "lnk", "testdir")
-	suite.NoDirExists(repoDir)
-
-	// Check that .lnk file no longer contains the directory
-	lnkFile := filepath.Join(suite.tempDir, "lnk", ".lnk")
-	if suite.FileExists(lnkFile) {
-		lnkContent, err := os.ReadFile(lnkFile)
-		suite.Require().NoError(err)
-		suite.NotContains(string(lnkContent), "testdir")
-	}
-
-	// Check that Git commit was made
-	commits, err := suite.lnk.GetCommits()
-	suite.Require().NoError(err)
-	suite.Len(commits, 2) // add + remove
-	suite.Contains(commits[0], "lnk: removed testdir")
-	suite.Contains(commits[1], "lnk: added testdir")
-}
-
-func (suite *LnkIntegrationTestSuite) TestLnkFileTracking() {
-	err := suite.lnk.Init()
-	suite.Require().NoError(err)
-
-	// Add a file
-	testFile := filepath.Join(suite.tempDir, ".bashrc")
-	err = os.WriteFile(testFile, []byte("export PATH=/usr/local/bin:$PATH"), 0644)
-	suite.Require().NoError(err)
-
-	err = suite.lnk.Add(testFile)
-	suite.Require().NoError(err)
-
-	// Add a directory
-	testDir := filepath.Join(suite.tempDir, ".ssh")
-	err = os.MkdirAll(testDir, 0700)
-	suite.Require().NoError(err)
-
-	configFile := filepath.Join(testDir, "config")
-	err = os.WriteFile(configFile, []byte("Host example.com"), 0600)
-	suite.Require().NoError(err)
-
-	err = suite.lnk.Add(testDir)
-	suite.Require().NoError(err)
-
-	// Check .lnk file contains both entries
-	lnkFile := filepath.Join(suite.tempDir, "lnk", ".lnk")
-	suite.FileExists(lnkFile)
-
-	lnkContent, err := os.ReadFile(lnkFile)
-	suite.Require().NoError(err)
-
-	lines := strings.Split(strings.TrimSpace(string(lnkContent)), "\n")
-	suite.Len(lines, 2)
-	suite.Contains(lines, ".bashrc")
-	suite.Contains(lines, ".ssh")
-
-	// Remove a file and check .lnk is updated
-	err = suite.lnk.Remove(testFile)
-	suite.Require().NoError(err)
-
-	lnkContent, err = os.ReadFile(lnkFile)
-	suite.Require().NoError(err)
-
-	lines = strings.Split(strings.TrimSpace(string(lnkContent)), "\n")
-	suite.Len(lines, 1)
-	suite.Contains(lines, ".ssh")
-	suite.NotContains(lines, ".bashrc")
-}
-
-func (suite *LnkIntegrationTestSuite) TestPullWithDirectories() {
-	// Initialize repo
-	err := suite.lnk.Init()
-	suite.Require().NoError(err)
-
-	// Add remote for pull to work
-	err = suite.lnk.AddRemote("origin", "https://github.com/test/dotfiles.git")
-	suite.Require().NoError(err)
-
-	// Create a directory and .lnk file in the repo directly to simulate a pull
-	repoDir := filepath.Join(suite.tempDir, "lnk", ".config")
-	err = os.MkdirAll(repoDir, 0755)
-	suite.Require().NoError(err)
-
-	configFile := filepath.Join(repoDir, "app.conf")
-	content := "setting=value"
-	err = os.WriteFile(configFile, []byte(content), 0644)
-	suite.Require().NoError(err)
-
-	// Create .lnk file
-	lnkFile := filepath.Join(suite.tempDir, "lnk", ".lnk")
-	err = os.WriteFile(lnkFile, []byte(".config\n"), 0644)
-	suite.Require().NoError(err)
-
-	// Get home directory for the test
-	homeDir, err := os.UserHomeDir()
-	suite.Require().NoError(err)
-
-	targetDir := filepath.Join(homeDir, ".config")
-
-	// Clean up the test directory after the test
-	defer func() {
-		_ = os.RemoveAll(targetDir)
-	}()
-
-	// Create a regular directory in home to simulate conflict scenario
-	err = os.MkdirAll(targetDir, 0755)
-	suite.Require().NoError(err)
-	err = os.WriteFile(filepath.Join(targetDir, "different.conf"), []byte("different"), 0644)
-	suite.Require().NoError(err)
-
-	// Pull should restore symlinks and handle conflicts
-	restored, err := suite.lnk.Pull()
-	// In tests, pull will fail because we don't have real remotes, but that's expected
-	// We can still test the symlink restoration part
-	if err != nil {
-		suite.Contains(err.Error(), "git pull failed")
-		// Test symlink restoration directly
-		restored, err = suite.lnk.RestoreSymlinks()
-		suite.Require().NoError(err)
-	}
-
-	// Should have restored the symlink
-	suite.GreaterOrEqual(len(restored), 1)
-	if len(restored) > 0 {
-		suite.Equal(".config", restored[0])
-	}
-
-	// Check that directory is back to being a symlink
-	info, err := os.Lstat(targetDir)
-	suite.Require().NoError(err)
-	suite.Equal(os.ModeSymlink, info.Mode()&os.ModeSymlink)
-
-	// Check content is preserved from repo
-	repoContent, err := os.ReadFile(configFile)
-	suite.Require().NoError(err)
-	suite.Equal(content, string(repoContent))
-}
-
-func (suite *LnkIntegrationTestSuite) TestRemoveNonSymlink() {
-	err := suite.lnk.Init()
-	suite.Require().NoError(err)
-
-	// Create a regular file (not managed by lnk)
-	testFile := filepath.Join(suite.tempDir, ".regularfile")
-	err = os.WriteFile(testFile, []byte("content"), 0644)
-	suite.Require().NoError(err)
-
-	err = suite.lnk.Remove(testFile)
-	suite.Error(err)
-	suite.Contains(err.Error(), "File is not managed by lnk")
-}
-
-func (suite *LnkIntegrationTestSuite) TestXDGConfigHomeFallback() {
-	// Test fallback to ~/.config/lnk when XDG_CONFIG_HOME is not set
-	suite.T().Setenv("XDG_CONFIG_HOME", "")
-
-	homeDir := filepath.Join(suite.tempDir, "home")
-	err := os.MkdirAll(homeDir, 0755)
-	suite.Require().NoError(err)
-	suite.T().Setenv("HOME", homeDir)
-
-	lnk := core.NewLnk()
-	err = lnk.Init()
-	suite.Require().NoError(err)
-
-	// Check that the lnk directory was created under ~/.config/lnk
-	expectedDir := filepath.Join(homeDir, ".config", "lnk")
-	suite.DirExists(expectedDir)
-}
-
-func (suite *LnkIntegrationTestSuite) TestInitWithRemote() {
-	// Test that init with remote adds the origin remote
-	err := suite.lnk.Init()
-	suite.Require().NoError(err)
-
-	remoteURL := "https://github.com/user/dotfiles.git"
-	err = suite.lnk.AddRemote("origin", remoteURL)
-	suite.Require().NoError(err)
-
-	// Verify the remote was added by checking git config
-	lnkDir := filepath.Join(suite.tempDir, "lnk")
-	cmd := exec.Command("git", "remote", "get-url", "origin")
-	cmd.Dir = lnkDir
-
-	output, err := cmd.Output()
-	suite.Require().NoError(err)
-	suite.Equal(remoteURL, strings.TrimSpace(string(output)))
-}
-
-func (suite *LnkIntegrationTestSuite) TestInitIdempotent() {
-	// Test that running init multiple times is safe
-	err := suite.lnk.Init()
-	suite.Require().NoError(err)
-
-	lnkDir := filepath.Join(suite.tempDir, "lnk")
-
-	// Add a file to the repo to ensure it's not lost
-	testFile := filepath.Join(lnkDir, "test.txt")
-	err = os.WriteFile(testFile, []byte("test content"), 0644)
-	suite.Require().NoError(err)
-
-	// Run init again - should be idempotent
-	err = suite.lnk.Init()
-	suite.Require().NoError(err)
-
-	// File should still exist
-	suite.FileExists(testFile)
-	content, err := os.ReadFile(testFile)
-	suite.Require().NoError(err)
-	suite.Equal("test content", string(content))
-}
-
-func (suite *LnkIntegrationTestSuite) TestInitWithExistingRemote() {
-	// Test init with remote when remote already exists (same URL)
-	remoteURL := "https://github.com/user/dotfiles.git"
-
-	// First init with remote
-	err := suite.lnk.Init()
-	suite.Require().NoError(err)
-	err = suite.lnk.AddRemote("origin", remoteURL)
-	suite.Require().NoError(err)
-
-	// Init again with same remote should be idempotent
-	err = suite.lnk.Init()
-	suite.Require().NoError(err)
-	err = suite.lnk.AddRemote("origin", remoteURL)
-	suite.Require().NoError(err)
-
-	// Verify remote is still correct
-	lnkDir := filepath.Join(suite.tempDir, "lnk")
-	cmd := exec.Command("git", "remote", "get-url", "origin")
-	cmd.Dir = lnkDir
-	output, err := cmd.Output()
-	suite.Require().NoError(err)
-	suite.Equal(remoteURL, strings.TrimSpace(string(output)))
-}
-
-func (suite *LnkIntegrationTestSuite) TestInitWithDifferentRemote() {
-	// Test init with different remote when remote already exists
-	err := suite.lnk.Init()
-	suite.Require().NoError(err)
-
-	// Add first remote
-	err = suite.lnk.AddRemote("origin", "https://github.com/user/dotfiles.git")
-	suite.Require().NoError(err)
-
-	// Try to add different remote - should error
-	err = suite.lnk.AddRemote("origin", "https://github.com/user/other-repo.git")
-	suite.Error(err)
-	suite.Contains(err.Error(), "already exists with different URL")
-}
-
-func (suite *LnkIntegrationTestSuite) TestInitWithNonLnkRepo() {
-	// Test init when directory contains a non-lnk Git repository
-	lnkDir := filepath.Join(suite.tempDir, "lnk")
-	err := os.MkdirAll(lnkDir, 0755)
-	suite.Require().NoError(err)
-
-	// Create a non-lnk git repo in the lnk directory
-	cmd := exec.Command("git", "init")
-	cmd.Dir = lnkDir
-	err = cmd.Run()
-	suite.Require().NoError(err)
-
-	// Add some content to make it look like a real repo
-	testFile := filepath.Join(lnkDir, "important-file.txt")
-	err = os.WriteFile(testFile, []byte("important data"), 0644)
-	suite.Require().NoError(err)
-
-	// Configure git and commit
-	cmd = exec.Command("git", "config", "user.name", "Test User")
-	cmd.Dir = lnkDir
-	err = cmd.Run()
-	suite.Require().NoError(err)
-
-	cmd = exec.Command("git", "config", "user.email", "test@example.com")
-	cmd.Dir = lnkDir
-	err = cmd.Run()
-	suite.Require().NoError(err)
-
-	cmd = exec.Command("git", "add", "important-file.txt")
-	cmd.Dir = lnkDir
-	err = cmd.Run()
-	suite.Require().NoError(err)
-
-	cmd = exec.Command("git", "commit", "-m", "important commit")
-	cmd.Dir = lnkDir
-	err = cmd.Run()
-	suite.Require().NoError(err)
-
-	// Now try to init lnk - should error to protect existing repo
-	err = suite.lnk.Init()
-	suite.Error(err)
-	suite.Contains(err.Error(), "contains an existing Git repository")
-
-	// Verify the original file is still there
-	suite.FileExists(testFile)
-}
-
-// TestSyncStatus tests the status command functionality
-func (suite *LnkIntegrationTestSuite) TestSyncStatus() {
-	// Initialize repo with remote
-	err := suite.lnk.Init()
-	suite.Require().NoError(err)
-
-	err = suite.lnk.AddRemote("origin", "https://github.com/test/dotfiles.git")
-	suite.Require().NoError(err)
-
-	// Add a file to create some local changes
-	testFile := filepath.Join(suite.tempDir, ".bashrc")
-	content := "export PATH=$PATH:/usr/local/bin"
-	err = os.WriteFile(testFile, []byte(content), 0644)
-	suite.Require().NoError(err)
-
-	err = suite.lnk.Add(testFile)
-	suite.Require().NoError(err)
-
-	// Get status - should show 1 commit ahead
-	status, err := suite.lnk.Status()
-	suite.Require().NoError(err)
-	suite.Equal(1, status.Ahead)
-	suite.Equal(0, status.Behind)
-	suite.Equal("origin/main", status.Remote)
-}
-
-// TestSyncPush tests the push command functionality
-func (suite *LnkIntegrationTestSuite) TestSyncPush() {
-	// Initialize repo
-	err := suite.lnk.Init()
-	suite.Require().NoError(err)
-
-	// Add remote for push to work
-	err = suite.lnk.AddRemote("origin", "https://github.com/test/dotfiles.git")
-	suite.Require().NoError(err)
-
-	// Add a file
-	testFile := filepath.Join(suite.tempDir, ".vimrc")
-	content := "set number"
-	err = os.WriteFile(testFile, []byte(content), 0644)
-	suite.Require().NoError(err)
-
-	err = suite.lnk.Add(testFile)
-	suite.Require().NoError(err)
-
-	// Add another file for a second commit
-	testFile2 := filepath.Join(suite.tempDir, ".gitconfig")
-	content2 := "[user]\n    name = Test User"
-	err = os.WriteFile(testFile2, []byte(content2), 0644)
-	suite.Require().NoError(err)
-
-	err = suite.lnk.Add(testFile2)
-	suite.Require().NoError(err)
-
-	// Modify one of the files to create uncommitted changes
-	repoFile := filepath.Join(suite.tempDir, "lnk", ".vimrc")
-	modifiedContent := "set number\nset relativenumber"
-	err = os.WriteFile(repoFile, []byte(modifiedContent), 0644)
-	suite.Require().NoError(err)
-
-	// Push should stage all changes and create a sync commit
-	message := "Updated configuration files"
-	err = suite.lnk.Push(message)
-	// In tests, push will fail because we don't have real remotes, but that's expected
-	// The important part is that it stages and commits changes
-	if err != nil {
-		suite.Contains(err.Error(), "git push failed")
-	}
-
-	// Check that a sync commit was made (even if push failed)
-	commits, err := suite.lnk.GetCommits()
-	suite.Require().NoError(err)
-	suite.GreaterOrEqual(len(commits), 3) // at least 2 add commits + 1 sync commit
-	suite.Contains(commits[0], message)   // Latest commit should contain our message
-}
-
-// TestSyncPull tests the pull command functionality
-func (suite *LnkIntegrationTestSuite) TestSyncPull() {
-	// Initialize repo
-	err := suite.lnk.Init()
-	suite.Require().NoError(err)
-
-	// Add remote for pull to work
-	err = suite.lnk.AddRemote("origin", "https://github.com/test/dotfiles.git")
-	suite.Require().NoError(err)
-
-	// Pull should attempt to pull from remote (will fail in tests but that's expected)
-	_, err = suite.lnk.Pull()
-	// In tests, pull will fail because we don't have real remotes, but that's expected
-	suite.Error(err)
-	suite.Contains(err.Error(), "git pull failed")
-
-	// Test RestoreSymlinks functionality separately
-	// Create a file in the repo directly
-	repoFile := filepath.Join(suite.tempDir, "lnk", ".bashrc")
-	content := "export PATH=$PATH:/usr/local/bin"
-	err = os.WriteFile(repoFile, []byte(content), 0644)
-	suite.Require().NoError(err)
-
-	// Test that RestoreSymlinks can be called (even if it doesn't restore anything in this test setup)
-	restored, err := suite.lnk.RestoreSymlinks()
-	suite.Require().NoError(err)
-	// In this test setup, it might not restore anything, and that's okay for Phase 1
-	suite.GreaterOrEqual(len(restored), 0)
-}
-
-// TestSyncStatusNoRemote tests status when no remote is configured
-func (suite *LnkIntegrationTestSuite) TestSyncStatusNoRemote() {
-	// Initialize repo without remote
-	err := suite.lnk.Init()
-	suite.Require().NoError(err)
-
-	// Status should indicate no remote
-	_, err = suite.lnk.Status()
-	suite.Error(err)
-	suite.Contains(err.Error(), "no remote configured")
-}
-
-// TestSyncPushWithModifiedFiles tests push when files are modified
-func (suite *LnkIntegrationTestSuite) TestSyncPushWithModifiedFiles() {
-	// Initialize repo and add a file
-	err := suite.lnk.Init()
-	suite.Require().NoError(err)
-
-	// Add remote for push to work
-	err = suite.lnk.AddRemote("origin", "https://github.com/test/dotfiles.git")
-	suite.Require().NoError(err)
-
-	testFile := filepath.Join(suite.tempDir, ".bashrc")
-	content := "export PATH=$PATH:/usr/local/bin"
-	err = os.WriteFile(testFile, []byte(content), 0644)
-	suite.Require().NoError(err)
-
-	err = suite.lnk.Add(testFile)
-	suite.Require().NoError(err)
-
-	// Modify the file in the repo (simulate editing managed file)
-	repoFile := filepath.Join(suite.tempDir, "lnk", ".bashrc")
-	modifiedContent := "export PATH=$PATH:/usr/local/bin\nexport EDITOR=vim"
-	err = os.WriteFile(repoFile, []byte(modifiedContent), 0644)
-	suite.Require().NoError(err)
-
-	// Push should detect and commit the changes
-	message := "Updated bashrc with editor setting"
-	err = suite.lnk.Push(message)
-	// In tests, push will fail because we don't have real remotes, but that's expected
-	if err != nil {
-		suite.Contains(err.Error(), "git push failed")
-	}
-
-	// Check that changes were committed (even if push failed)
-	commits, err := suite.lnk.GetCommits()
-	suite.Require().NoError(err)
-	suite.GreaterOrEqual(len(commits), 2) // add commit + sync commit
-	suite.Contains(commits[0], message)
-}
-
-func TestLnkIntegrationSuite(t *testing.T) {
-	suite.Run(t, new(LnkIntegrationTestSuite))
-}