diff --git a/src/wp-includes/comment.php b/src/wp-includes/comment.php
index e2ed55386a..c5be35b13b 100644
--- a/src/wp-includes/comment.php
+++ b/src/wp-includes/comment.php
@@ -696,12 +696,12 @@ class WP_Comment_Query {
 
 		// Parse comment IDs for an IN clause.
 		if ( ! empty( $this->query_vars['comment__in'] ) ) {
-			$where[] = 'comment_ID IN ( ' . implode( ',', wp_parse_id_list( $this->query_vars['comment__in'] ) ) . ' )';
+			$where[] = "$wpdb->comments.comment_ID IN ( " . implode( ',', wp_parse_id_list( $this->query_vars['comment__in'] ) ) . ' )';
 		}
 
 		// Parse comment IDs for a NOT IN clause.
 		if ( ! empty( $this->query_vars['comment__not_in'] ) ) {
-			$where[] = 'comment_ID NOT IN ( ' . implode( ',', wp_parse_id_list( $this->query_vars['comment__not_in'] ) ) . ' )';
+			$where[] = "$wpdb->comments.comment_ID NOT IN ( " . implode( ',', wp_parse_id_list( $this->query_vars['comment__not_in'] ) ) . ' )';
 		}
 
 		// Parse comment post IDs for an IN clause.
diff --git a/tests/phpunit/tests/comment/query.php b/tests/phpunit/tests/comment/query.php
index 19583105c0..0d7269c8f0 100644
--- a/tests/phpunit/tests/comment/query.php
+++ b/tests/phpunit/tests/comment/query.php
@@ -722,6 +722,53 @@ class Tests_Comment_Query extends WP_UnitTestCase {
 		$this->assertEquals( array( $comments[2], $comments[0], $comments[1] ), $found );
 	}
 
+	/**
+	 * @group 32081
+	 */
+	public function test_meta_query_should_work_with_comment__in() {
+		$comments = $this->factory->comment->create_many( 3 );
+
+		add_comment_meta( $comments[0], 'foo', 'jjj' );
+		add_comment_meta( $comments[1], 'foo', 'zzz' );
+		add_comment_meta( $comments[2], 'foo', 'jjj' );
+
+		$q = new WP_Comment_Query( array(
+			'comment__in' => array( $comments[1], $comments[2] ),
+			'meta_query' => array(
+				array(
+					'key' => 'foo',
+					'value' => 'jjj',
+				),
+			),
+			'fields' => 'ids',
+		) );
+
+		$this->assertEquals( array( $comments[2] ), $q->get_comments() );
+	}
+
+	/**
+	 * @group 32081
+	 */
+	public function test_meta_query_should_work_with_comment__not_in() {
+		$comments = $this->factory->comment->create_many( 3 );
+
+		add_comment_meta( $comments[0], 'foo', 'jjj' );
+		add_comment_meta( $comments[1], 'foo', 'zzz' );
+		add_comment_meta( $comments[2], 'foo', 'jjj' );
+
+		$q = new WP_Comment_Query( array(
+			'comment__not_in' => array( $comments[1], $comments[2] ),
+			'meta_query' => array(
+				array(
+					'key' => 'foo',
+					'value' => 'jjj',
+				),
+			),
+			'fields' => 'ids',
+		) );
+
+		$this->assertEquals( array( $comments[0] ), $q->get_comments() );
+	}
 
 	/**
 	 * @ticket 27064