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First commit. Just a simply list for now; I plan to make this real reStructuredText eventually.
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Technical deficiencies
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----------------------
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-- Maximum path lengths. Not a flaw in NTFS, but in the Windows OS itself. 260 characters, including filename.
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http://msdn.microsoft.com/en-us/library/aa365247%28VS.85%29.aspx#maxpath
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http://msdn.microsoft.com/en-us/library/ee681827%28VS.85%29.aspx#limits
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http://stackoverflow.com/questions/265769/maximum-filename-length-in-ntfs-windows-xp-and-windows-vista
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http://stackoverflow.com/questions/1065993/has-windows-7-fixed-the-255-character-file-path-limit
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http://www.codinghorror.com/blog/2006/11/filesystem-paths-how-long-is-too-long.html
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-- No built-in support for any filesystems but NTFS and FAT32/FAT16.
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-- Ease of bug reporting and logging.
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On Windows, you can Ctrl-C when a error window pops up to copy the error message.
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On Linux, you can attach gdb to a running process, start a logfile that catches all output to stderr, and run a backtrace when the program fails.
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Configuration deficiencies
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--------------------------
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-- Configuration files are not centralized in the user's home directory.
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Most of the things that users care about -- not losing configuration between installs -- are scattered around in various directories.
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On Linux, system level configuration is stored in /etc/ and user level configuration is stored in dotfiles (hidden folders) in the home directory.
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-- Package manager with signed binaries and easy backup/reinstall.
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-- Fixing configuration problems with commands instead of GUIs.
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GUIs are good for some applications. They are clumsy and error-prone for fixing configuration problems.
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Many Linux config problems can be fixed by a simple script that can be pasted into a terminal.
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Windows requires navigating deeply nested GUIs and ticking various checkboxes.
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